Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03947 ATGGGGTTTCATCACAGAAAACTAGTATCTTTCTCTGAGTGTGAATATTACTGTCATGAGGAACAGTCTTGTTCCACAGACTGTGATATTTGCATCGGAAATTGCTTAGGCTATAACCTTCAACCACCACCACTATCTCATGATCACACCAAAAACAAAACCTCAACTTACTTGATCATAAGTTTTTCTATTGTAGCAGCTCTTTTCCTTGTTTTATGCTTGTATGCCTTGTATGTCAAGTTTTTCTCTCATAGGAACAGGTCAAGAAGAACAACCTTATTAACAAGACAACAAACAGAACATGGTTTTGTTGTTGATGAAGAACATGATGATGGTTCTGTTGTTGATCACCCCATATGGTATATTCGTACTCTCGGTCTTCATGAATCGATTATTAATGCAATCACTGTTGTTAAATATAAGAAAGATGAAGGCTTGATTGATGGGTCAGATTGTTCTGTTTGTTTGAGTGAATTTGAACAAGATGAAAATCTTAGACTTTTGCCTAAGTGTAATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCACATACTAATTGTCCTATGTGCAGAGCTCCTATTGTTGTTGATCCTTTAAGGATTCCATCTATGGATCCTAATGTTTTTGTCGAAAATTCTCGTCGTATGGAAGTTTTGGAAAATAGTAATGGAAATGGAATGGAAGATAGTGTCGAAGAAGAAGAAGCCGAAGAAGAGGTCGAGGAAGATGAGAATTTAGGTTTAGAGATGGTAAATATGCAGCAGCCAAGAAGATCAGTTTCTCTTGATTCTTCTTCTGCTGCTAAGATCAATCTTGCTCTATCCAATTTTCTATCAGTGGAATCTCAAGGGAATTCTAATAGGGAACATGTAGGAGAAGTCAATGAACAAGTTGCTTCAAAGAGAGTTGGTGGAAATGGAAATATGGTAAATATGCATAGTGCTCCTTGTTCAATGAAAAGGTCAAGATCCTTCAATGGAAAACACTTATTATCATTGTATAGCAACAGTAAGAAGAAGATAAATCCACCAGTGAGAAGCTTTTGA 1056 0.3617 MGFHHRKLVSFSECEYYCHEEQSCSTDCDICIGNCLGYNLQPPPLSHDHTKNKTSTYLIISFSIVAALFLVLCLYALYVKFFSHRNRSRRTTLLTRQQTEHGFVVDEEHDDGSVVDHPIWYIRTLGLHESIINAITVVKYKKDEGLIDGSDCSVCLSEFEQDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVVDPLRIPSMDPNVFVENSRRMEVLENSNGNGMEDSVEEEEAEEEVEEDENLGLEMVNMQQPRRSVSLDSSSAAKINLALSNFLSVESQGNSNREHVGEVNEQVASKRVGGNGNMVNMHSAPCSMKRSRSFNGKHLLSLYSNSKKKINPPVRSF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03947 351 FunFam RING-H2 finger protein ATL54 127 200 - -
Trre8g03947 351 Pfam Ring finger domain 151 194 IPR001841 -
Trre8g03947 351 SMART ring_2 152 193 IPR001841 -
Trre8g03947 351 CDD RING-H2_EL5-like 151 194 - -
Trre8g03947 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 200 IPR013083 -
Trre8g03947 351 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Trre8g03947 351 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 48 200 IPR044675 -
Trre8g03947 351 SUPERFAMILY RING/U-box 142 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03947 Trre-Chr8 44367020 44368075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03947 50 244 C3H Transcription Factor Family AT1G72220 44.444 1.46e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03947 - - mtr:11411830 511.916