Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03934 ATGACTAGAAAGAAGATAGAGATAAAGAAAATCGACAACATAAGTTCAAGGCAAGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCAGACATTGCTCTTATGGTTTTTTCTGAAACTAGTAAGCTCTTCGAGTATGCTAGTACTTCAAGTATGGAACAAGTAATTGAAAGGCGTAATGGATATTCAGCAAATCATAGATTAATGGACCATCCATCTACTGATAAGCTTCAGGTTGAGAGTGACTCTAATTACGACACTTTGTGCAAGAAATTAGAAGATAAATCTCGTGAACTGAGGCATCTGAATGGAGAAAATCTGCAAGAATTGACAGTACAAGAACTCCAGAAACTAGAGGCAATACTTAAAAGAAGTTTGTCCAGTGTTTCAAAAATAAAGGATGAAATGTTTATGCAAGACATCAACACCCTTAAGAGAAAGGAAGTGAAACTGATAGAAGAAAACCAAAGATTGAAATATGTGGTACCAGACCTTATAAGTGGACAAATGCGACAATCATTGGAATCTGTTATTAGCGGATCATCTTATTTTGATGACACTGACACATCTCTCAACTTGGGGTTAGTTACTTTCCTTTACATATATATCATATCATCCAATGTAAGTACCGGTAATACTTGTTTGGTATTCATTAATCGTTAA 696 0.3549 MTRKKIEIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALMVFSETSKLFEYASTSSMEQVIERRNGYSANHRLMDHPSTDKLQVESDSNYDTLCKKLEDKSRELRHLNGENLQELTVQELQKLEAILKRSLSSVSKIKDEMFMQDINTLKRKEVKLIEENQRLKYVVPDLISGQMRQSLESVISGSSYFDDTDTSLNLGLVTFLYIYIISSNVSTGNTCLVFINR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03934 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre8g03934 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre8g03934 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre8g03934 231 ProSiteProfiles K-box domain profile. 89 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g03934 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 153 - -
Trre8g03934 231 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Trre8g03934 231 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Trre8g03934 231 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Trre8g03934 231 Coils Coil 96 116 - -
Trre8g03934 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre8g03934 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre8g03934 231 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre8g03934 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre8g03934 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03934 Trre-Chr8 44295466 44304596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03934 1 209 MADS-box Gene Family AT4G24540 46.396 1.57e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre8g03934 K-box 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03934 - - aprc:113860188 259.996