Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03906 ATGGTATTGGCTTATTCACTTGGTCATATATCTAGTGCTCATTTTAATCCGGCTGTTACCATTGCTCATGCTTCTACCAAAAGATTTCCATTAAAGCAGATACCAGCTTATTTAACTGCTCAACTGGTTGGATTAACACTTGCAAGTGCAGCTCTCAAACTTATATTCAGTGGAAAAGAAAACCAATTTGTAGGAACCCTTCCAGCTGGTTCCAATCTTCAAGCCTTTGTGGTTGAATTTATAATCACTTTCTATCTTATGTTCATAATTTCTGGAGTTGCCACTGATAACAGAGCGATGCAACAAGAAAATGAAGCTTTGTTAATCTTTACATGTACCCTTTGA 345 0.3681 MVLAYSLGHISSAHFNPAVTIAHASTKRFPLKQIPAYLTAQLVGLTLASAALKLIFSGKENQFVGTLPAGSNLQAFVVEFIITFYLMFIISGVATDNRAMQQENEALLIFTCTL 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03906 114 ProSitePatterns MIP family signature. 14 22 IPR022357 -
Trre8g03906 114 Pfam Major intrinsic protein 2 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g03906 114 PANTHER AQUAPORIN NIP2-1 1 103 IPR034294 -
Trre8g03906 114 PRINTS Major intrinsic protein family signature 78 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g03906 114 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g03906 114 Gene3D Glycerol uptake facilitator protein. 1 114 IPR023271 -
Trre8g03906 114 SUPERFAMILY Aquaporin-like 1 109 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03906 Trre-Chr8 44143729 44145085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03906 1 102 Major Intrinsic Protein MIP AT4G18910 69.725 1.14e-50 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03906 K09874 - lja:Lj0g3v0265739.1 164.466