Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03902 ATGCTTGTTACTTCTCCTCCACTCTCTCGTGCCAATGAACTCACCATTTCCTTCGAAGGCGAAGTTTATGTTTTCCCTTCCGTAACTCCTGAAAAGGTGCAGGCTGTGTTGTTATTCTTAGGAGGGCAGCAGGATACACCGAATACCGTCCCCACCTCCGATTTTTCGGTGCAGGGAAAATGTCAGGACATTTGGGGGATAAATGATCCTTCCCGTAGTTCAAAGCTTTCACGGAGAATTGAATCACTTGTTAGGTTCCGCGAGAAACGAAAAGAGAGATGTTTTGAGAAGAAAGTTCGGTACACTTGCCGTAAAGAGGTTGCTGAGAGGATGCAACGGAAGAACGGACAGTTTGCATCATTGAAGGAAGAGTACTGTTCTCCTGCTGAAAACCAGGACTCTAGCAACGGTACACCTTGCTTAGAATCTACTGAGTGTAGATGCCAACATTGTGGAATTGGTGAGAAGAGTACTCCAGTAATGCGTCGAGGACCAGCTGGTCCAAGATCTCTATGCAATGCCTGTGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAGGGACTGCTCTAGAACAGAATGAACTGGATACTTCAACTGATATAAAGCCTTTAAAAACAGAGCCAGAAAATTCATGTCCTGCACAGGACAAGGAGGAAAGCTCCCAGGAAACAAAGCCCGTGCTAATGGATGCCATACAGCCTCATGAGATGATAAATGAGCAGTATATGCTCGAATCTGCTGAAGCGGTTACTGACAATCTGTCCATTCAAGTGGAGGATAATGCTCTTGATCTGCTTGAGCAGGATAATACTATGGAGGATTTTGCTGATGCTTCTGGGACTGAATTTGAGATTCCTGCTGGTTTTGATGATCTGATTGATATCGATGATTCTAACATGAGGACTTACTGGCTATGA 936 0.4519 MLVTSPPLSRANELTISFEGEVYVFPSVTPEKVQAVLLFLGGQQDTPNTVPTSDFSVQGKCQDIWGINDPSRSSKLSRRIESLVRFREKRKERCFEKKVRYTCRKEVAERMQRKNGQFASLKEEYCSPAENQDSSNGTPCLESTECRCQHCGIGEKSTPVMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGGTALEQNELDTSTDIKPLKTEPENSCPAQDKEESSQETKPVLMDAIQPHEMINEQYMLESAEAVTDNLSIQVEDNALDLLEQDNTMEDFADASGTEFEIPAGFDDLIDIDDSNMRTYWL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03902 311 ProSitePatterns GATA-type zinc finger domain. 148 175 IPR000679 GO:0006355|GO:0043565
Trre8g03902 311 ProSiteProfiles Tify domain profile. 7 42 IPR010399 -
Trre8g03902 311 PANTHER GATA TRANSCRIPTION FACTOR 28 6 290 IPR045280 GO:0006355
Trre8g03902 311 MobiDBLite consensus disorder prediction 196 231 - -
Trre8g03902 311 Coils Coil 104 124 - -
Trre8g03902 311 Gene3D - 141 200 IPR013088 GO:0006355|GO:0008270
Trre8g03902 311 CDD ZnF_GATA 147 190 IPR000679 GO:0006355|GO:0043565
Trre8g03902 311 Pfam CCT motif 79 120 IPR010402 GO:0005515
Trre8g03902 311 SMART GATA_3 142 195 IPR000679 GO:0006355|GO:0043565
Trre8g03902 311 SMART tify_2 7 42 IPR010399 -
Trre8g03902 311 Pfam GATA zinc finger 148 184 IPR000679 GO:0006355|GO:0043565
Trre8g03902 311 Pfam tify domain 11 41 IPR010399 -
Trre8g03902 311 ProSiteProfiles CCT domain profile. 79 121 IPR010402 GO:0005515
Trre8g03902 311 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 144 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03902 Trre-Chr8 44123503 44128488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03902 10 191 Tify Gene Family AT1G51600 52.736 8.95e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre8g03902 CCT 2.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03902 - - mtr:11405700 463.766