Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03897 ATGGCTTCTTCATGGTTTCTCAAACTGCTTTTCAAATGCCTTCATCACTTCGCATGGCCCCTTCTCGCTCTGGTGTATCCTATGTGTGCTTCCGTACAAGCAATTGAGACTAATTCCTACGAAGAAACTAAAGATTTGATCTCATATTGGATACTTCTTTCATTAATTTACCTCTTTGAGTATGCCTTTATGAGTCTTCTTCCATGGTTTCACCTATGGCCATACATTAAGCTAATGATCATTTTTTGGCTCATCATGCCTGACTTTGGACGAGCTTCTTATGTTTATAACAATCTTATTTGCTCCATGAAACCACAAATAACCACATACTGGAGGAAGTGTTTTGTTGAGAGAGATAACTTTTTAATGCATGCAGAGAGATACATGAAAGAGAATGGAACTGAGGCCTTAGAGAAACTCATTGCTAGCAAGAACACAATGTGTAGGCTTGATGCCAAAGTCACAAATGAATTCATTGCTACTGGAAATGAACAAATTCTAAAGATAAATGGAGAAAGACTCCAAACAGAACACAAAGTCATCAAAGATTCTGAGGCTATTGAGCAAAAAGAAATTCCTGCAACAACGCTAAGAACCTATGCTAATATTGTAGCAAGTCAAACAACATCATCAACCATAGTAGAAACCAAAGAAATAGCTGGGAGAGACACAGCTGCTGGAGAGCTTCCTCAGAGTTCTTCTACACTGAAGGAAGTGCAGAGAGAGTGGACTTGTGCTTTATGTTTGGTAACATCATCGAGCGAGAAAGACTTGAATTCCCATCTTAACGGGAGGAAACACAGGGCTGCTTGTGAAGCAGCAGGTTTGAAAGTAAAGAAGCAACATGCTACGCAGAAGAACGTCCTGCCAGAACCTTTTAGGATGATTAATTCCAAATTAATATGTAAAGTGTGTAGTGTTATGATTCCTAGTGAAGAGTACATGGCCTCTCACATAAAAGGGTGGAAGCACTTGTCTAATATAAAAAGTTGA 993 0.3907 MASSWFLKLLFKCLHHFAWPLLALVYPMCASVQAIETNSYEETKDLISYWILLSLIYLFEYAFMSLLPWFHLWPYIKLMIIFWLIMPDFGRASYVYNNLICSMKPQITTYWRKCFVERDNFLMHAERYMKENGTEALEKLIASKNTMCRLDAKVTNEFIATGNEQILKINGERLQTEHKVIKDSEAIEQKEIPATTLRTYANIVASQTTSSTIVETKEIAGRDTAAGELPQSSSTLKEVQREWTCALCLVTSSSEKDLNSHLNGRKHRAACEAAGLKVKKQHATQKNVLPEPFRMINSKLICKVCSVMIPSEEYMASHIKGWKHLSNIKS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03897 330 SMART ZnF_U1_5 297 330 IPR003604 GO:0003676|GO:0008270
Trre8g03897 330 SMART ZnF_U1_5 240 274 IPR003604 GO:0003676|GO:0008270
Trre8g03897 330 Pfam Zinc-finger of C2H2 type 243 267 - -
Trre8g03897 330 Pfam Zinc-finger of C2H2 type 301 324 - -
Trre8g03897 330 Gene3D Classic Zinc Finger 227 273 - -
Trre8g03897 330 Gene3D Classic Zinc Finger 276 330 - -
Trre8g03897 330 PANTHER HVA22-LIKE PROTEINS 10 132 IPR004345 -
Trre8g03897 330 SUPERFAMILY beta-beta-alpha zinc fingers 227 273 IPR036236 -
Trre8g03897 330 SUPERFAMILY beta-beta-alpha zinc fingers 289 329 IPR036236 -
Trre8g03897 330 SMART c2h2final6 243 267 IPR013087 -
Trre8g03897 330 SMART c2h2final6 300 324 IPR013087 -
Trre8g03897 330 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03897 Trre-Chr8 44072814 44075522 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03897 243 329 C2H2 Transcription Factor Family AT2G19380 29.000 2.48e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03897 - - tpra:123912784 502.671