Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03893 ATGACTTCTTCATGGTTTCTCAAACTGGTTTCCAAATGCCTTCATCACTTCTCATGGCCTGTTGTTGCTCTGGTGTATCCTATGTGTGCTTCCGTACAAGCAATTGAGACTGATTCCTATGAAAAAACAAAGCATCTGATCTCATATTGGATACTTCTTTCACTAATTTACCTCTTTGAGTATGCTTTTATGAACCTTCTTCTATGGTTTCAGCTTTGGCCGTACATTAAGCTAATGACCGTCTTCTGGCTCATCATACCTGACTTTGGACGAGCTTCTTATGTTTATAATAACCTTATGTGCACCATGAAACCACAAATAGTCACATGTTGGAGGAAGTGTTTTGTTGAGAAAGATAACTTTATAATGCATGCAGAGAGATATATGAAAGAGAATGGAACTGAGGCCTTAGAGAAACTCATTGCTAGCAAGAACACAATGTGTAGGCCTGATGCAGAAGTGTCAAATGAAATCAAAGCCGCTGAGATGCTAAAGACAAATGGGGGAAGATTTCAAACAAAACACAAAGACATCAATGATTTGGAGGCTATTGTGAAAAAAGAAATTCCTGCAACCAAGCAAATGACCTATGCTAATATTGAGGCAAGTCAAAAGGTATTGTCAGCCATAGTAGAAACTAAAGGAATATTGGGAAGAGACCCAGGTGGTGGAGAGATTCCTCAAAGTTCTACTCAGAAAGAAGTGCAGAAAGAATGGACTTGTGCTTTGTGTTCGGTAAAAACATCGAGCGAGATAACCTTGATTTCCCACCTCAATGGGAGGAAACACAGGGATGCTTGTGAAGCAGCATCAGCAACTTTGAAAGTAAAGAAGCAACCTGCTACGCAGAAGAACGTCCTACCAGAACCTTTTAGGATGGTTAATTCCAAATTAATATGTAAAGTTTGTAATGTTATGCTTCCAAGTGAGGAGTGCATGGCCTCTCACATAAAAGGGGTGAAGCACTTGTCTAATATGAAAAGTTGA 987 0.3951 MTSSWFLKLVSKCLHHFSWPVVALVYPMCASVQAIETDSYEKTKHLISYWILLSLIYLFEYAFMNLLLWFQLWPYIKLMTVFWLIIPDFGRASYVYNNLMCTMKPQIVTCWRKCFVEKDNFIMHAERYMKENGTEALEKLIASKNTMCRPDAEVSNEIKAAEMLKTNGGRFQTKHKDINDLEAIVKKEIPATKQMTYANIEASQKVLSAIVETKGILGRDPGGGEIPQSSTQKEVQKEWTCALCSVKTSSEITLISHLNGRKHRDACEAASATLKVKKQPATQKNVLPEPFRMVNSKLICKVCNVMLPSEECMASHIKGVKHLSNMKS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03893 328 Pfam TB2/DP1, HVA22 family 27 100 IPR004345 -
Trre8g03893 328 SMART ZnF_U1_5 236 270 IPR003604 GO:0003676|GO:0008270
Trre8g03893 328 SMART ZnF_U1_5 295 328 IPR003604 GO:0003676|GO:0008270
Trre8g03893 328 Gene3D Classic Zinc Finger 225 269 - -
Trre8g03893 328 Gene3D Classic Zinc Finger 274 328 - -
Trre8g03893 328 PANTHER HVA22-LIKE PROTEINS 10 132 IPR004345 -
Trre8g03893 328 Pfam Zinc-finger of C2H2 type 239 263 - -
Trre8g03893 328 Pfam Zinc-finger of C2H2 type 299 322 - -
Trre8g03893 328 SMART c2h2final6 239 263 IPR013087 -
Trre8g03893 328 SMART c2h2final6 298 322 IPR013087 -
Trre8g03893 328 SUPERFAMILY beta-beta-alpha zinc fingers 287 327 IPR036236 -
Trre8g03893 328 SUPERFAMILY beta-beta-alpha zinc fingers 223 270 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03893 Trre-Chr8 44024705 44026664 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03893 239 327 C2H2 Transcription Factor Family AT2G19380 30.693 6.99e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03893 - - tpra:123914627 545.428