Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03886 ATGTCGCAGCTTTCCATTCAACGAGCAAAGAAGTTGAAGTTTTTGATGCCTCAGATCTCTGCTTTGGGAAGTTACCATTTCTCAACAGCGGCTCAATCATCTTCCACTAAACCCAATGCCCCGAGGGTTCCAAATCTTATTGGGGGAAGGTTTCTTGAGTCAAAATCATCATCTTTCATCGATGTTATAAACCCGGCAACACAAGAAGTTGTATCACAAGTTCCATTGACTACAGATGAAGAGTTTAAAGCTGCTGTATCTGCAGCAAAGAAGGCATTTCCATCATGGCGTAACACTCCAGTTACAACACGCCAGCGTGTTATGTTGAAATTTCAGGAGCTCATACGCAGAGATATGGATAAACTTGCTCTTAATGTGACCACCGAACAAGGAAAGACGCTGAAGGATGCACAAGGAGATGTCTTTCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGAATGGGAACTCTACAAATGGGAGAGTATGTTTCGAATGTATCACATGGAGTCGACACATACAGCGTTAGAGAACCAATTGGTGTTTGTGCTGGTATTTGCCCTTTCAACTTTCCTGCAATGATTCCCTTATGGATGTTCCCTGTGGCTGTTACCTGTGGCAATACCTTTGTTTTAAAACCATCGGAGAAAGACCCAGGTGCTTCTTTAATGCTTGCAGAATTGGCATTGGAGGCTGGTTTGCCCGAGGGTGTCTTAAATGTGGTTCATGGAACCCATGATATTGTGAATGCCATTTGTGATGATGACGATATCAAAGCCATATCATTTGTTGGTTCTAATGTTGCTGGAATGCACATATATTCAAGAGCAGCGGCTAAAGGGAAACGTGTTCAGTCTAATATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCAAATGTCGATGCTACTGTAAATGCTTTAATTGCTGCTGGTTTTGGAGCTGCTGGACAGAGGTGCATGGCTCTCAGCACAGTTGTTTTTGTAGGAGGCTCACAACAATGGGAAACTAAAATCGTAGAACGTGCCAAAGCTCTTAAAGTAAATGCAGGAACTGAACCTGATACAGATCTTGGTCCGGTTATCAGCAAACAGGCAAAGGAGCGAGTGAAATCATTAGTTCAATCTGGGGTTGAAAGTGGTGCCAAACTACTTCTTGATGGAAGAAATATAGTGGTCCCAGGATATGAATCTGGCAATTTTGTCGGGCCAACTATCTTATCAAATATCAGTACCGATATGGAGTGCTACAAGGAGGAAATTTTTGGCCCAGTTCTTCTTTTCATGGAGGCTGATAGCTTAGAAGAGGCTATAGACATTATCAACAAAAACAAGTATGGAAACGGTGCTTCTATATTTACTACTTCTGGCGTTGCTGCAAGGAAATTTCAGACCGAGATTGAGGCAGGGCAGGTTGGTATCAATGTTCCTATTCCAGTTCCTTTGCCATTTTTCTCATTTACCGGCAACAAAGCGTCATTTGCCGGCGATCTCAATTTCTACGGCAAGGCAGGGGTTAACTTTTTTACACAAATCAAAACAATAACTCAACAGTGGAAGGATTCGGTAGGCGGTAGCAAGGTTAACTTGGCAATGCCAACCTCTCAAAAATCTTGA 1617 0.4292 MSQLSIQRAKKLKFLMPQISALGSYHFSTAAQSSSTKPNAPRVPNLIGGRFLESKSSSFIDVINPATQEVVSQVPLTTDEEFKAAVSAAKKAFPSWRNTPVTTRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMGTLQMGEYVSNVSHGVDTYSVREPIGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASLMLAELALEAGLPEGVLNVVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATVNALIAAGFGAAGQRCMALSTVVFVGGSQQWETKIVERAKALKVNAGTEPDTDLGPVISKQAKERVKSLVQSGVESGAKLLLDGRNIVVPGYESGNFVGPTILSNISTDMECYKEEIFGPVLLFMEADSLEEAIDIINKNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFFTQIKTITQQWKDSVGGSKVNLAMPTSQKS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03886 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 496 IPR016162 GO:0016491
Trre8g03886 538 Pfam Aldehyde dehydrogenase family 53 515 IPR015590 GO:0016491
Trre8g03886 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Trre8g03886 538 SUPERFAMILY ALDH-like 38 520 IPR016161 GO:0016491
Trre8g03886 538 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 288 488 - -
Trre8g03886 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Trre8g03886 538 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 9 535 IPR010061 GO:0004491
Trre8g03886 538 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 47 294 - -
Trre8g03886 538 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 45 519 IPR010061 GO:0004491
Trre8g03886 538 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03886 Trre-Chr8 43913965 43918524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03886 12 503 Aldehyde Dehydrogenase Gene Family AT2G14170 80.488 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03886 K00140 - gmx:100791508 954.125