Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03876 ATGGCAGCACCTTGCAACTTTCAGAAAATCCATCTTCTTGCTTTCCTTCATTTAACATTATCACTCTTGTTTCTTGTAACATCTCATGCAGCTCCATTATCATTCAACTATGATCAACTTGGTAGTGACAAAACAAAAGCCTTCAATTTTTCAGGTACTGATGTCTATCAAGATAACCAAGTCCTTCAACTCACAAAGTATGAGAAAGACAGTCTAGGTAGAGTCACATATTCAAAACTGTTTCATCTTTGGGACATAAACACAAGTCAAGTCACAGATTTCACTACTCGTTTCTCATTTACTATTAACACCCCCAACAAAACCAAACATGGAGATGGCATCACCTTCTATTTGGCACATCCAAATTTTCCATTACCTGTTCCAAGAGATGGAAGTGGTATCGGTCTTGTAAGCCGTATTCAATTGAATAATCCAAATTTCGCAAAAGAAAATCCATTTGTAGCTGTAGAATTTGATACTTTCGTTAATGAGTTCGATCCTAAATATGATCATGTTGGAATTGATGTTAATTCTATTAGCACTGCTTATACTACACAATGGTTCACTAGCATGGATGAAAGAGGATATGATGCTGAAGTAAGTTATAATTCTAGTTCAAACAATTTATCTGTCATCTTCACAGGTTATCAAGATAACAACATAATCCAACAACATTTGTCAAGTGTTGTTAATTTGAGAGAAGTCCTACCTGATTGGGTTGAATTCGGATTCACTTCGGCAACAGGATTGTTATGGGGGGAATATCATACTCTTAACTCATGGTCCTTCAACTCAAGTTTAGATTTTGAAGCAGAAAAGGATGGAACAAAAATAGGACTTGTTATAGGACTAAGTGTTGGTGGTGCTGTTGTTTTGATTTGTGTTATTGGGTTGGTTTGTTTTGTGAAATGGAAACTGAGGAATAAATATATGAAAGATGTTTTGCATTCTGATCTTGCAATGGATAGTGATTTTGAAAGAAGCTCTCTACCTAAGAAATTCACCTTTGAAGAACTTGCTAGAGCAACTAACAACTTTGCAAAAGAACATAAAATTGGAGAGGGCGGTTTCGGAGGAGTCTACAAGGGATTTATAAAAGACTTGAAAACTCATGTTGCTATAAAGAAAGTTTCTAAGGAATCAAATCAAGGAGTTAAGGAGTATGCATCTGAAGTTAAAGTCATTAGTCAATTAAGGCATAAGAATTTAGTTCAACTTTTTGGATGGTGTCACAGACAGAATGATCTGCTTTTAGTTTATGAGTTTGTGCAAAATGGAAGCTTAGATTCTTACCTTTTCAAAGGAAAAGCCGGAACGTATGGTTATTTATCACCTGAAGCTGCTACTAGAGGTAAAGCTAGTAGAGAATCTGATGTATATAGTTTTGGAGTAGTTGCTTTGGAAATAGCTTGTGGTAGAAAAGCAATTGAACCAAGTCTTGGTGAAGATAATATTTACTTGGTGGATTGGGTTTGGGAACTTTATGGTATAGGTGAAGTTCTTAAAGCATGTGATTCAAGATTATATGGAGAATTCAATGAGAAGGAAATTGAGAGATTGATGATAGTTGGACTTTGGTGTACTCATATTGATCATGTTCAAAGACCTATGATTAGACAAGTTGTTCAAGTGCTTAATTTTGATGCTCCATTGCCTAATCTTCCATTACAGATGATTGCTTCTACCTATAATACATCATTCTATTCTGTGTCCTCTAAATCTAAGACTCCTCCTGATTTTGCAAATAAGACTTCAACTTCAAGCAATAGTACCTTTACAGGGTCATCCTCAGAATCAAGCACAGCCTTTGGAGTCATTTCTCCATCAGCTGCACTTCTAAATACATACTAG 1851 0.356 MAAPCNFQKIHLLAFLHLTLSLLFLVTSHAAPLSFNYDQLGSDKTKAFNFSGTDVYQDNQVLQLTKYEKDSLGRVTYSKLFHLWDINTSQVTDFTTRFSFTINTPNKTKHGDGITFYLAHPNFPLPVPRDGSGIGLVSRIQLNNPNFAKENPFVAVEFDTFVNEFDPKYDHVGIDVNSISTAYTTQWFTSMDERGYDAEVSYNSSSNNLSVIFTGYQDNNIIQQHLSSVVNLREVLPDWVEFGFTSATGLLWGEYHTLNSWSFNSSLDFEAEKDGTKIGLVIGLSVGGAVVLICVIGLVCFVKWKLRNKYMKDVLHSDLAMDSDFERSSLPKKFTFEELARATNNFAKEHKIGEGGFGGVYKGFIKDLKTHVAIKKVSKESNQGVKEYASEVKVISQLRHKNLVQLFGWCHRQNDLLLVYEFVQNGSLDSYLFKGKAGTYGYLSPEAATRGKASRESDVYSFGVVALEIACGRKAIEPSLGEDNIYLVDWVWELYGIGEVLKACDSRLYGEFNEKEIERLMIVGLWCTHIDHVQRPMIRQVVQVLNFDAPLPNLPLQMIASTYNTSFYSVSSKSKTPPDFANKTSTSSNSTFTGSSSESSTAFGVISPSAALLNTY 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03876 616 ProSitePatterns Legume lectins beta-chain signature. 154 160 IPR019825 -
Trre8g03876 616 FunFam Lectin-domain containing receptor kinase A4.3 427 565 - -
Trre8g03876 616 Gene3D - 31 281 - -
Trre8g03876 616 SUPERFAMILY Protein kinase-like (PK-like) 330 568 IPR011009 -
Trre8g03876 616 Gene3D Transferase(Phosphotransferase) domain 1 419 547 - -
Trre8g03876 616 ProSitePatterns Legume lectins alpha-chain signature. 236 245 IPR000985 -
Trre8g03876 616 Gene3D Phosphorylase Kinase; domain 1 331 418 - -
Trre8g03876 616 ProSiteProfiles Protein kinase domain profile. 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03876 616 Pfam Legume lectin domain 33 273 IPR001220 GO:0030246
Trre8g03876 616 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 267 IPR013320 -
Trre8g03876 616 Pfam Protein tyrosine and serine/threonine kinase 349 434 IPR001245 GO:0004672|GO:0006468
Trre8g03876 616 Pfam Protein tyrosine and serine/threonine kinase 440 543 IPR001245 GO:0004672|GO:0006468
Trre8g03876 616 PANTHER - 28 433 - -
Trre8g03876 616 CDD lectin_legume_LecRK_Arcelin_ConA 33 267 IPR001220 GO:0030246
Trre8g03876 616 FunFam L-type lectin-domain containing receptor kinase IX.1 331 422 - -
Trre8g03876 616 ProSitePatterns Protein kinases ATP-binding region signature. 352 376 IPR017441 GO:0005524
Trre8g03876 616 MobiDBLite consensus disorder prediction 573 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03876 Trre-Chr8 43849368 43851428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03876 435 564 Receptor kinase-like Gene Family AT5G10530 54.135 4.56e-38 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre8g03876 Lectin_legB 7e-59 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03876 - - cam:101491058 682.945