Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03875 ATGGCAGCACCTTGCAACTTTCAGAAAATCCATCTTCTTGCTTTCCTTCATTTAACATTATCACTCTTGTTTCTTGTAACATCTCATGCAGCTCCATTATCATTCAACTATGATCAACTTGGTAGTGACAAAACAAAAGCCTTCAATTTTTCAGGTACTGATGTCTATCAAGATAACCAAGTCCTTCAACTCACAAAGTATGAGAAAGACAGTCTAGGTAGAGTCACATATTCAAAACTGTTTCATCTTTGGGACATAAACACAAGTCAAGTCACAGATTTCACTACTCGTTTCTCATTTACTATTAACACCCCCAACAAAACCAAACATGGAGATGGCATCACCTTCTATTTGGCACATCCAAATTTTCCATTACCTGTTCCAAGAGATGGAAGTGGTATCGGTCTTGTAAGCCGTATTCAATTGAATAATCCAAATTTCGCAAAAGAAAATCCATTTGTAGCTGTAGAATTTGATACTTTCGTTAATGAGTTCGATCCTAAATATGATCATGTTGGAATTGATGTTAATTCTATTAGCACTGCTTATACTACACAATGGTTCACTAGCATGGATGAAAGAGGATATGATGCTGAAGTAAGTTATAATTCTAGTTCAAACAATTTATCTGTCATCTTCACAGGTTATCAAGATAACAACATAATCCAACAACATTTGTCAAGTGTTGTTAATTTGAGAGAAGTCCTACCTGATTGGGTTGAATTCGGATTCACTTCGGCAACAGGATTGTTATGGGGGGAATATCATACTCTTAACTCATGGTCCTTCAACTCAAGTTTAGATTTTGAAGCAGAAAAGGATGGAACAAAAATAGGACTTGTTATAGGACTAAGTGTTGGTGGTGCTGTTGTTTTGATTTGTGTTATTGGGTTGGTTTGTTTTGTGAAATGGAAACTGAGGAATAAATATATGAAAGATGTTTTGCATTCTGATCTTGCAATGGATAGTGATTTTGAAAGAAGCTCTCTACCTAAGAAATTCACCTTTGAAGAACTTGCTAGAGCAACTAACAACTTTGCAAAAGAACATAAAATTGGAGAGGGCGGTTTCGGAGGAGTCTACAAGGGATTTATAAAAGACTTGAAAACTCATGTTGCTATAAAGAAAGTTTCTAAGGAATCAAATCAAGGAGTTAAGGAGTATGCATCTGAAGTTAAAGTCATTAGTCAATTAAGGCATAAGAATTTAGTTCAACTTTTTGGATGGTGTCACAGACAGAATGATCTGCTTTTAGTTTATGAGTTTGTGCAAAATGGAAGCTTAGATTCTTACCTTTTCAAAGGAAAAGGTTTACTAACATGGACAGTGAGATATAATATAGCTAGAGGTTTAGCCTCAGCATTATTATACCTTCATGAAGAGTGTGAGCAATGTGTACTTCATCGAGACATAAAACCGAGCAATATTATGTTGGATACTAATTTTAATACAAAGCTTGGAGATTTTGGTTTGGCTAGATTAATGAACCATGAGATACAATCAAAGACAACCGTTTTAGCCGGAACGTATGGTTATTTATCACCTGAAGCTGCTACTAGAGGTAAAGCTAGTAGAGAATCTGATGTATATAGTTTTGGAGTAGTTGCTTTGGAAATAGCTTGTGGTAGAAAAGCAATTGAACCAAGTCTTGGTGAAGATAATATTTACTTGGTGGATTGGGTTTGGGAACTTTATGGTATAGGTGAAGTTCTTAAAGCATGTGATTCAAGATTATATGGAGAATTCAATGAGAAGGAAATTGAGAGATTGATGATAGTTGGACTTTGGTGTACTCATATTGATCATGTTCAAAGACCTATGATTAGACAAGTTGTTCAAGTGCTTAATTTTGATGCTCCATTGCCTAATCTTCCATTACAGATGATTGCTTCTACCTATAATACATCATTCTATTCTGTGTCCTCTAAATCTAAGACTCCTCCTGATTTTGCAAATAAGACTTCAACTTCAAGCAATAGTACCTTTACAGGGTCATCCTCAGAATCAAGCACAGCCTTTGGAGTCATTTCTCCATCAGCTGCACTTCTAAATACATACTAG 2061 0.3547 MAAPCNFQKIHLLAFLHLTLSLLFLVTSHAAPLSFNYDQLGSDKTKAFNFSGTDVYQDNQVLQLTKYEKDSLGRVTYSKLFHLWDINTSQVTDFTTRFSFTINTPNKTKHGDGITFYLAHPNFPLPVPRDGSGIGLVSRIQLNNPNFAKENPFVAVEFDTFVNEFDPKYDHVGIDVNSISTAYTTQWFTSMDERGYDAEVSYNSSSNNLSVIFTGYQDNNIIQQHLSSVVNLREVLPDWVEFGFTSATGLLWGEYHTLNSWSFNSSLDFEAEKDGTKIGLVIGLSVGGAVVLICVIGLVCFVKWKLRNKYMKDVLHSDLAMDSDFERSSLPKKFTFEELARATNNFAKEHKIGEGGFGGVYKGFIKDLKTHVAIKKVSKESNQGVKEYASEVKVISQLRHKNLVQLFGWCHRQNDLLLVYEFVQNGSLDSYLFKGKGLLTWTVRYNIARGLASALLYLHEECEQCVLHRDIKPSNIMLDTNFNTKLGDFGLARLMNHEIQSKTTVLAGTYGYLSPEAATRGKASRESDVYSFGVVALEIACGRKAIEPSLGEDNIYLVDWVWELYGIGEVLKACDSRLYGEFNEKEIERLMIVGLWCTHIDHVQRPMIRQVVQVLNFDAPLPNLPLQMIASTYNTSFYSVSSKSKTPPDFANKTSTSSNSTFTGSSSESSTAFGVISPSAALLNTY 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03875 686 SUPERFAMILY Protein kinase-like (PK-like) 330 638 IPR011009 -
Trre8g03875 686 Gene3D Transferase(Phosphotransferase) domain 1 423 637 - -
Trre8g03875 686 MobiDBLite consensus disorder prediction 643 671 - -
Trre8g03875 686 Gene3D - 31 281 - -
Trre8g03875 686 Pfam Legume lectin domain 33 273 IPR001220 GO:0030246
Trre8g03875 686 ProSitePatterns Legume lectins alpha-chain signature. 236 245 IPR000985 -
Trre8g03875 686 ProSiteProfiles Protein kinase domain profile. 346 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03875 686 Pfam Protein kinase domain 347 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03875 686 CDD lectin_legume_LecRK_Arcelin_ConA 33 267 IPR001220 GO:0030246
Trre8g03875 686 ProSitePatterns Protein kinases ATP-binding region signature. 352 376 IPR017441 GO:0005524
Trre8g03875 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 267 IPR013320 -
Trre8g03875 686 FunFam L-type lectin-domain containing receptor kinase IX.1 331 422 - -
Trre8g03875 686 ProSitePatterns Legume lectins beta-chain signature. 154 160 IPR019825 -
Trre8g03875 686 CDD STKc_IRAK 352 616 - -
Trre8g03875 686 FunFam Lectin-domain containing receptor kinase A4.3 423 635 - -
Trre8g03875 686 SMART serkin_6 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03875 686 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Trre8g03875 686 PANTHER - 28 622 - -
Trre8g03875 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03875 Trre-Chr8 43849368 43851428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03875 22 634 Receptor kinase-like Gene Family AT5G10530 45.886 3.13e-170 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre8g03875 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03875 - - cam:101491058 1081.24