Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03874 ATGATTATTCCATATACATCCTCATTGACTTTTAATTTCACTAGTTTTGATCCTAATGACAGAAGCATAATCTACGAAGGATCGGCAAATCCAGCATCGTCAGCTATCCAACTTACGATAAATCAACAAGATTCACAGAATAGAAAAAATTATGGAGATGGAATAGCATTCTTTCTCATCCCTTCAGGTACAAAGAAGCCTAATGCAACAAAAGGTGGTTCTATGGGTCTAACACTTGATGACCAAGCATTGAACTCAACTCAAACTAATCCATTTGTTGCTGTTGAGTTTGATATCTATCAGAATCCTTGGGATCCACCACTTGAACATGCCGGAATCGACATCAACTCGATGATATCTGTTGCTAATTTGACATGGTTGGCTGATATTAAAGAAGAATTTGTTACTGTCGGCTTCTCAGCTGCCACAGGAAATGCAACTGCTATTCATAGTATCTCTTCATGGGATTTTAGCTCAACTTTAGAATCACAACAAGATAACAACAAAACAAACATAGAAGATCCGAATATAGCTCCTAGTTCTAAGAAGAAAAAGTCCAAGGCAGGACTAGCAGTAGGATTGGGAATTGGTGGCTTTGTTTTGATTGCTGTTTTTGGTTTAATTTCATTTTACTTGTGGAAGAAGTTGAAGAAAGGAAAAGAAGAGGAAGATGGTGATTTTGAAGAGTACATGGGCGAGGATTTTGGACGAGGAGGACCCAAGAAGTACACTTATGCAGAATTAGCACATGCAGCTAATAATTTCAAAGATGAACATAAGCTAGGACAAGGAGGATTTGGAGGTGTTTATAGAGGTTTTCTTAAAGACACAAAATCTTATGTTGCTATTAAGAGGGTATCAGAAGATTCTCATCAAGGGATAAAGGAGTTTGCATCAGAAGTAACAATTATTAGCAAATTAAGGCATAGAAATCTAGTGCAATTGATTGCTCCATTGCCTAATCTTCCATCAAGTATGCCTGTACCAACATATCTTGAGGGCCCTTTGAATTCATTCACTGCTCCATTTAGCATAAGTGGTTCAGAGACAAGTCAAAGCCAGAATATAATAAGTTTTAGTTCAAACACTAACTCATCTGGGTTTACTACTACTACTACTTCTACAACTTCTGATGATGTTTCTCCTTCTTTGTCGCTTCTGTATTCTAGAAGAAATTAA 1179 0.3698 MIIPYTSSLTFNFTSFDPNDRSIIYEGSANPASSAIQLTINQQDSQNRKNYGDGIAFFLIPSGTKKPNATKGGSMGLTLDDQALNSTQTNPFVAVEFDIYQNPWDPPLEHAGIDINSMISVANLTWLADIKEEFVTVGFSAATGNATAIHSISSWDFSSTLESQQDNNKTNIEDPNIAPSSKKKKSKAGLAVGLGIGGFVLIAVFGLISFYLWKKLKKGKEEEDGDFEEYMGEDFGRGGPKKYTYAELAHAANNFKDEHKLGQGGFGGVYRGFLKDTKSYVAIKRVSEDSHQGIKEFASEVTIISKLRHRNLVQLIAPLPNLPSSMPVPTYLEGPLNSFTAPFSISGSETSQSQNIISFSSNTNSSGFTTTTTSTTSDDVSPSLSLLYSRRN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03874 392 Pfam Protein kinase domain 255 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03874 392 Gene3D - 131 175 - -
Trre8g03874 392 Gene3D - 6 130 - -
Trre8g03874 392 SUPERFAMILY Protein kinase-like (PK-like) 240 318 IPR011009 -
Trre8g03874 392 PANTHER - 32 316 - -
Trre8g03874 392 MobiDBLite consensus disorder prediction 365 384 - -
Trre8g03874 392 ProSitePatterns Protein kinases ATP-binding region signature. 261 284 IPR017441 GO:0005524
Trre8g03874 392 Pfam Legume lectin domain 45 126 IPR001220 GO:0030246
Trre8g03874 392 Pfam Legume lectin domain 130 170 IPR001220 GO:0030246
Trre8g03874 392 SUPERFAMILY Concanavalin A-like lectins/glucanases 8 169 IPR013320 -
Trre8g03874 392 ProSiteProfiles Protein kinase domain profile. 255 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03874 392 Gene3D Phosphorylase Kinase; domain 1 240 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03874 Trre-Chr8 43845931 43847997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03874 1 317 Receptor kinase-like Gene Family AT5G10530 33.580 1.32e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre8g03874 Pkinase 8.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03874 - - cam:101491058 412.149