Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03873 ATGGTGTTTGCAGCACCAAAAGCAATACATGTCCAGTTCCACAATTATTTTTTGTTATCAATTTTCTTACTCTTAAATTTGATTATTCCAAATGTATCCTCAGTAACCTTCAACTTCACTAGTTTTGATCCTAATGACGAAACCATAATCTATGAAGGATCAGCAAATCCTGAATCATTAGATATCCAACTTACTATAAACTATGGAAGCATTGGTAGAGCCACGTATAACCAACCTATCCATTTGTGGAATAAAACTACAAAAAATCTCACAGATTTCACATCCCATTTCACTTTTACCATTGATTCTCATAATAGCAAACATTATGGAGATGGTATGGCATTCTTTCTTGCCCCTTATGGTTCAAAGATGCCTAATGCTACAAAAGGTCGTTCTATGGGTCTAACACTTGATGACCAAGCAATGAACTCAACTGAAACTAATCCATTTGTTGCTGTTGAGTTTGATATCTATAAGAATCCTTGGGATCCACCTCATGAACATGCCGGAATCGATATCAACTCAATGATATCTGTTGCTAATGTGACATGGTTGGCTGATATCAAAGAAGGTAAACTCAATGAGGCTTGGGTAAGTTACAATGCTAGTTCATTAAATCTAAGTGTTGTATTCACTGGTTTTGATAATGTAACCTCAACCACTGTGCATCAACATCTATCTTCCATTGTTGATCTCAGACTTTATCTACCAGAGTTTGTTACTATTGGCTTCTCAGCGGCTACAGGAAATGCAACTGCTATTCATACTCTCAATTCATGGGATTTTAGCTCAAATTTGGAAGCAGAACAAGATAACAACAAAATAAACACACAAGAACCACTTGCAAGGTCTCCATCCCTCAACACAACTTCCACTAAAACGAAAAAGTCCAAGACAGGACTAGCATTGGGACTAGGAGTTGGTGGATTTGTTTTGATCGGTGTGTTCGGTCTTATATCGGTTTGCCTGTGGAATAAGACGAAGAGAGGAAGTGAAAAGGAAGATGGTGAATTTGAACAGTACATGGGTGAGGATTTTGGAAGTGGAGGACCCAAGAAGTATACATATGCAGAATTAGCACATGCAGCTAATAATTTCAAAGATGAACATAAGCTAGGACAAGGAGGATTTGGAGGTGTTTATAGAGGTTTTCTTAAAGACATAAAATCTTATGTTGCTATCAAGAGGGTGTCAGAAGATTCTCATCAAGGGATAAAGGAGTTTGCATCAGAAGTAACAATTATTAGCAAATTAAGGCACAGAAATCTAGTGCAATTGATTGGTTGGTGTCATGACAGAAAGAAACTCTTGCTTGTATATGAGTACATGCAAAATGGTAGTTTAGACATTCATCTTTTCAAAAAACAAAGCTTTTTGAAATGGGCTGTTAGGTATACAGTTGCTAGAGGCTTAGCTTCTGCATTGTTATATTTGCATGAAGAATGGGTACAATGTGTTATACAGAGACATAAAAGCAAGCAACATAATGTTGGATTCAGAGTTCAATGTTAA 1512 0.3671 MVFAAPKAIHVQFHNYFLLSIFLLLNLIIPNVSSVTFNFTSFDPNDETIIYEGSANPESLDIQLTINYGSIGRATYNQPIHLWNKTTKNLTDFTSHFTFTIDSHNSKHYGDGMAFFLAPYGSKMPNATKGRSMGLTLDDQAMNSTETNPFVAVEFDIYKNPWDPPHEHAGIDINSMISVANVTWLADIKEGKLNEAWVSYNASSLNLSVVFTGFDNVTSTTVHQHLSSIVDLRLYLPEFVTIGFSAATGNATAIHTLNSWDFSSNLEAEQDNNKINTQEPLARSPSLNTTSTKTKKSKTGLALGLGVGGFVLIGVFGLISVCLWNKTKRGSEKEDGEFEQYMGEDFGSGGPKKYTYAELAHAANNFKDEHKLGQGGFGGVYRGFLKDIKSYVAIKRVSEDSHQGIKEFASEVTIISKLRHRNLVQLIGWCHDRKKLLLVYEYMQNGSLDIHLFKKQSFLKWAVRYTVARGLASALLYLHEEWVQCVIQRHKSKQHNVGFRVQC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03873 503 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 277 IPR013320 -
Trre8g03873 503 CDD lectin_legume_LecRK_Arcelin_ConA 37 266 IPR001220 GO:0030246
Trre8g03873 503 Gene3D Transferase(Phosphotransferase) domain 1 443 494 - -
Trre8g03873 503 Gene3D - 32 279 - -
Trre8g03873 503 ProSitePatterns Legume lectins alpha-chain signature. 236 245 IPR000985 -
Trre8g03873 503 ProSitePatterns Protein kinases ATP-binding region signature. 372 395 IPR017441 GO:0005524
Trre8g03873 503 ProSiteProfiles Protein kinase domain profile. 366 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03873 503 Pfam Legume lectin domain 35 275 IPR001220 GO:0030246
Trre8g03873 503 Gene3D Phosphorylase Kinase; domain 1 351 442 - -
Trre8g03873 503 Pfam Protein kinase domain 366 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03873 503 MobiDBLite consensus disorder prediction 274 293 - -
Trre8g03873 503 FunFam L-type lectin-domain containing receptor kinase IX.1 351 442 - -
Trre8g03873 503 SUPERFAMILY Protein kinase-like (PK-like) 350 481 IPR011009 -
Trre8g03873 503 FunFam L-type lectin-domain containing receptor kinase IX.1 33 275 - -
Trre8g03873 503 PANTHER - 56 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03873 Trre-Chr8 43841145 43842656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03873 27 489 Receptor kinase-like Gene Family AT5G10530 42.038 2.28e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre8g03873 Lectin_legB 4.5e-68 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03873 - - cam:101491058 721.465