Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03872 ATGCAAACGGTGGACAAACTACAGCTTTTGCAGGGACTAGGATACATGGCTCCTGAATGTGCTACCATAGGAAGGGCTAGTAAAGAAACAGATGTGTATAGTTTTGGAATTGTTGCTTTAGAGATAGCATGTGGAAGAAAACCTATCATTAAGGCTCAAGAAAATGAAATAAATATTGTGGAGTGGGTTTGGGGGCTATATGGAAGTGGGAGAATTCTTGAAGCAGTAGATCCAAGACTAGGTGAAGATTTTGAAGAGGAACAAATTAAGTGCTTAATGATTGTTGGTCTTTGGTGTACTCATCCTGATCCTAATAATAGGCCTTCAGTAAGACAAGCTACTCAAGTGCTTAATTTTGAAGCTACATTACCTAATCTTCCATCAAGTATGCCTATACCAACATATCTTGAAGGTCCTTTGAACTCATTCACTATTCCATCCACCATAAATGGTTCAGAGGAAGGTCAAAACATGAATACAGTAAGCTTGATTAGTTCAAACACAAACTCATCTGAGGTCACTACTTCTGATGATGATTCTTCTTCTGAGTCAGTTTTGTATTCTAGATAA 570 0.3789 MQTVDKLQLLQGLGYMAPECATIGRASKETDVYSFGIVALEIACGRKPIIKAQENEINIVEWVWGLYGSGRILEAVDPRLGEDFEEEQIKCLMIVGLWCTHPDPNNRPSVRQATQVLNFEATLPNLPSSMPIPTYLEGPLNSFTIPSTINGSEEGQNMNTVSLISSNTNSSEVTTSDDDSSSESVLYSR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03872 189 Gene3D Transferase(Phosphotransferase) domain 1 3 138 - -
Trre8g03872 189 ProSiteProfiles Protein kinase domain profile. 1 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03872 189 PANTHER - 10 131 - -
Trre8g03872 189 Pfam Protein kinase domain 13 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03872 189 SUPERFAMILY Protein kinase-like (PK-like) 13 135 IPR011009 -
Trre8g03872 189 FunFam Lectin-domain containing receptor kinase A4.3 2 137 - -
Trre8g03872 189 MobiDBLite consensus disorder prediction 166 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03872 Trre-Chr8 43840540 43841109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03872 13 135 Receptor kinase-like Gene Family AT5G10530 56.693 5.53e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre8g03872 Pkinase 6.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03872 - - gmx:100782344 246.899