Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03866 ATGCATGTCCAGTTCCATAATTATTTTTTGTTAGCTATTTTCTTACTCTTAAATTTGATTATTCCAAATGTATCCTCATTGACCTTTAACTTCACTAGTTTTGATCCTAATGACAAAACCATAATCTATGAAGGATCAGCAAGTTCTACATCATCAGCTATCGATCTTACTATAAACGAGCAGGGTAAGCTTATGAATGGAAGTATTGGTAGAGCCACATATTACCAACCTATCCATTTGTGGAATAAAACTACAAAAAATCTCACAGATTTCACATCCCATTTCACTTTTACCATAAATTCACAGAATAGAAAAAATTATGGAGATGGTATGGCATTCTTTCTTGCCCCTTCTGGTTCAAAGATGCCTAATGCTACAAAAGGTCGTTCTATGGGTCTAACACTTGATGACCAAGCAATGAACTCAACTGAAACTAATCCATTTGTTGCTGTTGAGTTTGATATCTATCATAATTCTTTTGATCCACCATATGAACATGCCGGAATCGACATAAACTCAATGAGATCTGTTGCTAATGTGACATGGTTGGCAGATATCCAACATGGTAAACTCAATGAGGCTTGGGTAAGTTACAATGCTAGTTCATTAAATCTAAGTGTTGTATTCACTGGTTTTGATAATGTAACCTCTACCATTGTGAGTCAACATCTATCTTCCATTGTTGATCTCAGACTTTATCTGCCAGAATTTGTTACTATTGGCTTCTCAGCTGCTACAGGAAATTCAACTGCTATTCATACTCTCAATTCGTGGGATTTTAGCTCAAATTTGGAAGCAGAACAAGATAACAACAAAACAAACACACAAGACCCGGTTGCAAGTTCTCCATCCTTCAACACAACTCCCACTAAAACGAAAAAGGCCAAGACAGGACTAGCATTGGGATTGGGAATTGGTGGGTTTGTTTTGATTGGTGTGTTCGGTTTTATTTCGGTTTTCCTGTGGAATAAGTCGAAGAGAGGAAGTGAAGAGGAAGATGGTGAATTTGAAGAGTACATGGGTGAGGATTTTGGAAGAGGAGGTCCTAAGAAGTATGCATATGCAGAATTAGCACATGCAGCTAATAATTTCAAAGATGAACATAAGTTAGGACAAGGAGGATTTGGAGGTGTTTATAGAGGTTTTCTTAAAGACATAAAATCTGATGTTGCTATCAAGAGGGTGTCAGAAGATTCTCATCAAGGGATAAAGGAGTTTGCATCAGAAGTAACAATTATTAGCAAATTAAGGCATAGAAATCTAGTGCAATTGATTGGTTGGTGTCATGAAAGAAAAAAGCTATTGCTTGTTTACGAGTACATGCCTAATGGTAGTTTAGATATTCATCTTTTCAAAAAACAAAGCTTTTTGAAATGGGCTGTTTGGTATACAATTGTTAGAGGCTTGGCTTCTGCATTGTTATATTTGCATGAAGAATGGGAACAATGTGTTATACATAGAGACATAAAAACAAGCAACATAATGTTGGATTCAGAGTTCAATGCAAAACTAGGAGATTTTGGTTTAGCAAGGTTTGTAGATCATGCAAAAGGTGCACAAACTACAGCTTTAGCTGGGACTTTAGGATACATGGCTCCTGAATGTGCTACCATAGGAAGGGCTAGTAAAGAAACAGATGTGTATAGTTTTGGAATTGTTGCTTTAGAGATAGCATGTGGAAGAAAACCTATCATTAAGGCTCAAGAAAATGAAATAAATATTGTGGAGTGGGTTTGGGGGCTATATGGAAGTGGGAGAATTCTTGAAGCAGTAGATCCAAGACTAGGTGAAGATTTTGAAGAGGAACAAATTAAGTGCTTAATGATTGTTGGTCTTTGGTGTACTCATCCTGATCCTAATAATAGACCTTCAATAAGACAAGCTACACAAGTGCTTAATTTTGAAGCTACATTGCCTAATCTTCCATCAAGTATGCCTATACCATCATATCTTGAGGGTCCTTTGAAGTCATTCACTACTCCATTCACTATAAATGGTTCAGAGGAAGGTCAAAACACAAACTCATCTGGTGTCACTATTTCTGATGATGGTTCCCCTTCTGAGTCACTTGTGTAA 2076 0.368 MHVQFHNYFLLAIFLLLNLIIPNVSSLTFNFTSFDPNDKTIIYEGSASSTSSAIDLTINEQGKLMNGSIGRATYYQPIHLWNKTTKNLTDFTSHFTFTINSQNRKNYGDGMAFFLAPSGSKMPNATKGRSMGLTLDDQAMNSTETNPFVAVEFDIYHNSFDPPYEHAGIDINSMRSVANVTWLADIQHGKLNEAWVSYNASSLNLSVVFTGFDNVTSTIVSQHLSSIVDLRLYLPEFVTIGFSAATGNSTAIHTLNSWDFSSNLEAEQDNNKTNTQDPVASSPSFNTTPTKTKKAKTGLALGLGIGGFVLIGVFGFISVFLWNKSKRGSEEEDGEFEEYMGEDFGRGGPKKYAYAELAHAANNFKDEHKLGQGGFGGVYRGFLKDIKSDVAIKRVSEDSHQGIKEFASEVTIISKLRHRNLVQLIGWCHERKKLLLVYEYMPNGSLDIHLFKKQSFLKWAVWYTIVRGLASALLYLHEEWEQCVIHRDIKTSNIMLDSEFNAKLGDFGLARFVDHAKGAQTTALAGTLGYMAPECATIGRASKETDVYSFGIVALEIACGRKPIIKAQENEINIVEWVWGLYGSGRILEAVDPRLGEDFEEEQIKCLMIVGLWCTHPDPNNRPSIRQATQVLNFEATLPNLPSSMPIPSYLEGPLKSFTTPFTINGSEEGQNTNSSGVTISDDGSPSESLV 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03866 691 CDD lectin_legume_LecRK_Arcelin_ConA 27 264 IPR001220 GO:0030246
Trre8g03866 691 PANTHER - 45 642 - -
Trre8g03866 691 Gene3D Phosphorylase Kinase; domain 1 349 440 - -
Trre8g03866 691 Pfam Protein kinase domain 364 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03866 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Trre8g03866 691 ProSitePatterns Legume lectins alpha-chain signature. 234 243 IPR000985 -
Trre8g03866 691 SUPERFAMILY Protein kinase-like (PK-like) 349 651 IPR011009 -
Trre8g03866 691 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 273 IPR013320 -
Trre8g03866 691 ProSitePatterns Protein kinases ATP-binding region signature. 370 393 IPR017441 GO:0005524
Trre8g03866 691 Pfam Legume lectin domain 26 274 IPR001220 GO:0030246
Trre8g03866 691 MobiDBLite consensus disorder prediction 268 292 - -
Trre8g03866 691 CDD STKc_IRAK 370 633 - -
Trre8g03866 691 MobiDBLite consensus disorder prediction 661 691 - -
Trre8g03866 691 FunFam L-type lectin-domain containing receptor kinase IX.1 25 273 - -
Trre8g03866 691 FunFam Lectin-domain containing receptor kinase A4.3 441 652 - -
Trre8g03866 691 Gene3D Transferase(Phosphotransferase) domain 1 441 653 - -
Trre8g03866 691 ProSiteProfiles Protein kinase domain profile. 364 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03866 691 SMART serkin_6 364 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03866 691 FunFam L-type lectin-domain containing receptor kinase IX.1 349 440 - -
Trre8g03866 691 Gene3D - 24 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03866 Trre-Chr8 43822861 43824936 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03866 7 650 Receptor kinase-like Gene Family AT5G10530 46.870 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre8g03866 Pkinase 1.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03866 - - cam:101491058 1026.93