Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03863 ATGACTCCTTTGCATGCTATTCTTCACACTCAAACACTTGTTTTTTGTTATGCAATAGGAACCATTTCCACACTGCAAATAATCCATCTTGCAAACTCATTGTCATTTGATTACCCCTACTTTAGCAATGGTGATGTCAATTGGGAAGGTGATGCTTCTCCTTATAAAGGAGCTATTCAAGTCACTTCCAACACCATTGATCAAAACAACAATTACAGCGTTGGTCGAGTCACGAGTTTTAAACAAATGCATCTCTGGGATATGAACTCTGGAAAACTCACTGACTTCACCACCAAATTTTCCTTTGTTATTTTTTCAAAAACAAGGGAATATGGAGACGGAATGGCATTTTTCTTGGCCGATCCAAATCTCCCACTTTTGAAGAATATCAAAGAAGGTGGCGGTCTTGGCCTTGTGGATGCAGACCAAGTACTAAAATCAACTCAACACTCATTTGTGGCAGTAGAGTTTGACACCTTCAATAATCCATGGGACCCTTCAGGTGAAGGCACTCATGTTGGCTTGAATTTGAACTCTATGAGGTCTAACATAACTAAGCCATGGTTGACAAATATTCTGGAATGGAGAATTTACAATTGCAGCATTAAATACAATTCCAGCACTCTCAATTTGAGGGTGTCATTCACCATGTATGATAATGATGATAAACCAGTTGAAGAGCACATATCACATAACGTTGATTTGAGAGATTTCTTACCTGAGAAGGTTATTGTTGGATTCTCTGCTGCAACAGGAAGATTGTATGAGGTGCATACTCTTCGATCATGGTCATTTAGTTCAAGTCTACTAAGTGATGAGAACAGATATCAGATTGCGGCACCGACCTCCAGTCCTGTAATTTCTGAACAAGGAAATAACATAGGCTTGAAGGTAGGTCTTGGAATTGGTACAGGCTTGGCTATAGGTTTATCAGGGCTGGTTTGTACTCTATTATGGAAAAGGCGTAGAGGGAGGAAAAGAGAGTTTGGTTTTGATCTCAACATGGATGATGAATTCCAAAAGGGATCTGGACCTAAGAGGTTTTTCTACAATGAACTAGTGAGTGCAACAAACAAATTTTCGGAGTCAGATAAGGTGGGACAAGGTGGTTTTGGTGGAGTATACAAAGGTTATTTGAAAGACTTGAACTCCTATGTTGCTATTAAGAGAATGTCAAAAGAGTCTAAACAGGGAATACTAGAATATGTGACTGAAGTGAAAGTCATAAGTCAATTGAGACACAGAAATCTAGTACAGCTTCTTGGTTGGTGCCACAGGAAGAACGATTTTCTTCTAATATACGAGTTTATGTCGAATGGAAGCTTAGATTCCCATCTATACGGTAAAAGAAGCATCTTAACATGGACAGCGAGGTATAACATCACATTGGGCTTGGCTTCAGCATTGCTTTACCTACAGGAAGAATGGGAGCAGTGTGTGCTTCACAGGGACATTAAATCAAGCAACATTATGTTGGATTCATGTTTTAATGCTAAGCTTGGTGATTTTGGTTTAGCTAGGCTGGTGGATCATGAGAAAGGGTCACAAACGACACTAATAGCTGGGACAAGGGGTTATATTGCACCTGAATATTTCACATCAGGGAAGGCTACTAAAGAATCTGATATATACAGCTTTGGTGTAGTTTTATTGGAAATAGTCACTGGAAGGAAAGCTATTGAAAGAGAAGAAAAGGAGGGTCAAATAAGTGTAGTTGAGTGGGTTTGGGATCTTTATGGATTTGGAAAGTTCCTTCAAGCAGCTGACCCTAAGTTATGTGGAGCATTTGATGAGCTGCAATTGAAACATTTGGTGATTGTTGGCCTTTGGTGTGTTCATCCAGATTATACATTTAGGCCTTCTATAAGACAAGTGATTCAGGTGCTCAAATTTGAGTCTCCTTTACCAATTCTCCCAGAAAAAATGCCTGTGCCAACCTATCTTCCTCCAACAATTAAAGCACTTTTTTCTTCAATTTCATCCACCTATTGGACGAAAAGTTAG 2004 0.3932 MTPLHAILHTQTLVFCYAIGTISTLQIIHLANSLSFDYPYFSNGDVNWEGDASPYKGAIQVTSNTIDQNNNYSVGRVTSFKQMHLWDMNSGKLTDFTTKFSFVIFSKTREYGDGMAFFLADPNLPLLKNIKEGGGLGLVDADQVLKSTQHSFVAVEFDTFNNPWDPSGEGTHVGLNLNSMRSNITKPWLTNILEWRIYNCSIKYNSSTLNLRVSFTMYDNDDKPVEEHISHNVDLRDFLPEKVIVGFSAATGRLYEVHTLRSWSFSSSLLSDENRYQIAAPTSSPVISEQGNNIGLKVGLGIGTGLAIGLSGLVCTLLWKRRRGRKREFGFDLNMDDEFQKGSGPKRFFYNELVSATNKFSESDKVGQGGFGGVYKGYLKDLNSYVAIKRMSKESKQGILEYVTEVKVISQLRHRNLVQLLGWCHRKNDFLLIYEFMSNGSLDSHLYGKRSILTWTARYNITLGLASALLYLQEEWEQCVLHRDIKSSNIMLDSCFNAKLGDFGLARLVDHEKGSQTTLIAGTRGYIAPEYFTSGKATKESDIYSFGVVLLEIVTGRKAIEREEKEGQISVVEWVWDLYGFGKFLQAADPKLCGAFDELQLKHLVIVGLWCVHPDYTFRPSIRQVIQVLKFESPLPILPEKMPVPTYLPPTIKALFSSISSTYWTKS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03863 667 CDD STKc_IRAK 366 630 - -
Trre8g03863 667 FunFam L-type lectin-domain containing receptor kinase IX.1 345 436 - -
Trre8g03863 667 SUPERFAMILY Protein kinase-like (PK-like) 344 652 IPR011009 -
Trre8g03863 667 Gene3D Transferase(Phosphotransferase) domain 1 437 649 - -
Trre8g03863 667 ProSiteProfiles Protein kinase domain profile. 360 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03863 667 ProSitePatterns Legume lectins alpha-chain signature. 239 248 IPR000985 -
Trre8g03863 667 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 275 IPR013320 -
Trre8g03863 667 SMART serkin_6 360 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03863 667 ProSitePatterns Legume lectins beta-chain signature. 153 159 IPR019825 -
Trre8g03863 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Trre8g03863 667 ProSitePatterns Protein kinases ATP-binding region signature. 366 389 IPR017441 GO:0005524
Trre8g03863 667 Gene3D - 31 280 - -
Trre8g03863 667 CDD lectin_legume_LecRK_Arcelin_ConA 34 259 IPR001220 GO:0030246
Trre8g03863 667 PANTHER - 60 632 - -
Trre8g03863 667 Gene3D Phosphorylase Kinase; domain 1 345 436 - -
Trre8g03863 667 FunFam Lectin-domain containing receptor kinase A4.3 437 649 - -
Trre8g03863 667 FunFam L-type lectin-domain containing receptor kinase IX.1 32 278 - -
Trre8g03863 667 Pfam Protein kinase domain 361 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03863 667 Pfam Legume lectin domain 33 270 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03863 Trre-Chr8 43812591 43814594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03863 23 647 Receptor kinase-like Gene Family AT5G10530 47.500 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre8g03863 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03863 - - gmx:100780181 1023.46