Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03852 ATGGATACCTATCAATATCCACCTTCATTTCCAGATTCCGGTAACTCATCGCCGCGTTCGAGAGAAATCGATTTCGATAATCCCTCTTCATGGGAAGAGCAACAGAGTTACAAAGCAAAGTTCATGTGCAGTTACGGTGGAAAGATCCAACCACGCAGCCACGACAATCAGCTTTCCTATATCGGCGGCGACACCAAAATACTAGCCGTCGATCGTAACATCAAGTTTCAAGCCTTTCTCTCGAAGCTATCCACTCTCTGCGACGCAATTCAACAAGATGTAACGTTCAAGTACCAGCTTCCCGGTGAAGAACTCGATGCTCTTATCTCCGTTACAACGGAAGACGATCTCGAACACATGATGCATGAATACGATCGTCTCTATCGTCCTTCTTCAAAACCGGTTAGAATGAGGCTTTTTATATTTATCTCTCCGAATTCGGGTTCGGTTTCGGTTTCTCAACCCGATCAACTTAAACCTCATTCCAACGCTGATTTTCTCTTTGGTCTTGATAACAAAACCATAGCTCCACCGTCTCATCCTCCTTCGTATGCTGCTGCTGTGAAGTATCATGATCCTGTGCCGGATCTTGTTGCTCCGGTAACTGAGTATCCGCCACGTGGAGTTGTTGATGATAGTGTTGAAATTCAGAGGCAGATACAGCGTTTGCAGGTTTCTGAAGGTGAGCAAAACTTGTATCGGAGAAGTGTAGATGGATTCACCGGAGGTTTTGCTGCGGCTGCTACCGTTGCTCCTGGAGGTGATTATTACATGCAGAAGATGCCGGAGAAAGTTGCTCCGTCGAATTCTCCAACTGCTGTTCATCATCCCTCAGGTTACTGGCCGGAAAAACAATTTTCTGGCGAAGGTTTTCCGATGCCGGGGATAAAGACTTCAGGTGGAGGGGATCAGCATGTTTACATGATGCCGGCGCCGGGGACATTCTACGCGCCTCAGATGATGCGTCCACCGACGGCGCAGGTGAGTCAGGGGTACTACGCTGTGCAGCGAATGTCTACTGATGGATACCGGGAACAGCCGGTTTACGGCGGAGTTCCGCCTCAGAGCGTGGCGTTTTCGTCGGCGGGTCAAGGGAGTTTGGCACCGGCTCAGCCAGTCAAACCTTCGGCTTATGCTGAAGGATATGGTTTAGTTAGGCCAGCTGGCGTAGCGGATAATTCGGGCAGTGGTGGCTATGCGCAAGTTGCGTATGATAGTGTAAGTGGGAGACATGTTTATTATACTGCGCCGGGAGGTGTGGTACATGCGCCGCAGTATCAAGGGGTTGCTCCGGTATTTAGCAATGATATGAGAACGGCTGCAGTTCCTGTGGGCCAGGATCCTAAAGTGCATGTGTCCCTATGTGTTGCAACACATATTTTGCTCAAGGGGATCAAAGTTCGAACTTCGGTCATCCCACTTCATCTTAAGGGTGAAATTTCAAGTCACGGGACTACTCGACAAAAAAAATTGACCACACCTCCGGTGGCAGCACCTACACAGTACTATGTTGCTACAGTGCTACACTACCCAGAAGAACCAGCTTTCACTGAGGGATGGTAA 1563 0.4901 MDTYQYPPSFPDSGNSSPRSREIDFDNPSSWEEQQSYKAKFMCSYGGKIQPRSHDNQLSYIGGDTKILAVDRNIKFQAFLSKLSTLCDAIQQDVTFKYQLPGEELDALISVTTEDDLEHMMHEYDRLYRPSSKPVRMRLFIFISPNSGSVSVSQPDQLKPHSNADFLFGLDNKTIAPPSHPPSYAAAVKYHDPVPDLVAPVTEYPPRGVVDDSVEIQRQIQRLQVSEGEQNLYRRSVDGFTGGFAAAATVAPGGDYYMQKMPEKVAPSNSPTAVHHPSGYWPEKQFSGEGFPMPGIKTSGGGDQHVYMMPAPGTFYAPQMMRPPTAQVSQGYYAVQRMSTDGYREQPVYGGVPPQSVAFSSAGQGSLAPAQPVKPSAYAEGYGLVRPAGVADNSGSGGYAQVAYDSVSGRHVYYTAPGGVVHAPQYQGVAPVFSNDMRTAAVPVGQDPKVHVSLCVATHILLKGIKVRTSVIPLHLKGEISSHGTTRQKKLTTPPVAAPTQYYVATVLHYPEEPAFTEGW 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03852 520 Pfam PB1 domain 54 141 IPR000270 GO:0005515
Trre8g03852 520 Gene3D - 59 143 - -
Trre8g03852 520 PANTHER OS05G0427100 PROTEIN-RELATED 11 340 - -
Trre8g03852 520 SMART PB1_new 53 144 IPR000270 GO:0005515
Trre8g03852 520 CDD PB1_UP2 42 142 - -
Trre8g03852 520 MobiDBLite consensus disorder prediction 1 30 - -
Trre8g03852 520 SUPERFAMILY CAD & PB1 domains 54 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03852 Trre-Chr8 43721888 43726163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03852 37 172 MAP Kinase Kinase Kinase AT5G57610 37.956 1.18e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03852 - - psat:127106335 775.393