Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03840 ATGTTTCTGCATCATGATAGCAAGGAAGGTTCCAACGATATGCAAGCCAAGAAGTTGTTCGAGACATTGAAGGATTGTGTTGTTCGGTCTGCCAATGGAAAAGAAAACATAAAACCTAAGAAGAAGAACAACAACAAAAGGTCCAGTAAACCTTCTGTTACTAGTAGCAAGTTATCGGCGCCTTCTGTCAGCATTCCTCCAAGCTTCGAGGAATGCACAACACCTCAACAGACGAATGGCTATGACTGTGGACTCTTTGTCTTGGCCATTGCAAGAGCAATATGCTCTAAACTAAGGCATCAACCAAACCAGGAATGGAAGGGCGTGAGAATTGCCAACACTAATTTGATCAAGGTGGTTCTAGGACTGATAGTGTTGACAGGAGATTCTGTGTACACCAGATTACATGACGGACCAAATGGGGAATTCTATAGGGTTCCTCTCTTCTTTATGAAGGTAGTCTGTCCTCATATTCCGTTTATGTATTCCTTGTTACTTTGGAGATGTGGGCCTTTTCTCATGGCTGGCAGGGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGATAGCTGTGGGAACTACAGCCTCTTACGTTTATTCTGTTTATGCTCTTCTATATGGCGCTCTTACTGGATTTTGGTCCCCAACTTACTTTGAAACAAGTGCTATGCTTATAACATTTGTTTTGTTGGGGAAGTATTTGGAAGTCCTTGCCAAGGGAAAGACATCTGATGCCATAAAAAAATTAGTAGAACTTGCTCCTGCAACAGCTTTATTGATCGTTAATGATAAAGATGGTAAATCTATTGAAGAAAGGGAAATTGATTCTTTGCTCGTTCAACCGGGTGACACATTGAAAGTTCTTCCTGGAGGTGAATGTTTCAGTTATTGGGGGTACAATAAATTTGCATGGCTTACTTCACATTAA 930 0.4108 MFLHHDSKEGSNDMQAKKLFETLKDCVVRSANGKENIKPKKKNNNKRSSKPSVTSSKLSAPSVSIPPSFEECTTPQQTNGYDCGLFVLAIARAICSKLRHQPNQEWKGVRIANTNLIKVVLGLIVLTGDSVYTRLHDGPNGEFYRVPLFFMKVVCPHIPFMYSLLLWRCGPFLMAGRALRNGSTNMDVLIAVGTTASYVYSVYALLYGALTGFWSPTYFETSAMLITFVLLGKYLEVLAKGKTSDAIKKLVELAPATALLIVNDKDGKSIEEREIDSLLVQPGDTLKVLPGGECFSYWGYNKFAWLTSH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03840 309 Gene3D Adenoviral Proteinase; Chain A 1 121 - -
Trre8g03840 309 MobiDBLite consensus disorder prediction 48 65 - -
Trre8g03840 309 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 173 293 - -
Trre8g03840 309 MobiDBLite consensus disorder prediction 31 65 - -
Trre8g03840 309 SUPERFAMILY Cysteine proteinases 2 104 IPR038765 -
Trre8g03840 309 Pfam Ulp1 protease family, C-terminal catalytic domain 67 105 IPR003653 GO:0006508|GO:0008234
Trre8g03840 309 Gene3D - 240 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03840 Trre-Chr8 43607024 43610973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03840 130 293 Primary Pumps ATPases AT5G44790 59.296 1.01e-67 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03840 K17686 - gmx:100798969 261.922