Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03831 ATGGAGAATATTTCATTCATCAGAGGGTTTCCTAATCAGGAAATAATGGAGGATCCTTCTTTATGTCTTCATCAGTGGCATTTGAACTCTATTGATGAGTCTAACTCAATGCCAATAGCTTCTGCTTTTGGAGACACTTTACAACACCATTCATATATTTATCCAAACTTTAATCACAGAACTTCAGTTCAAACTTCTCAGATGCTAGATACTCAATTTGTTTCGTACCCGAATCTTGTTTCATTTGTCGATTCGAATCACTTAAATCAGTTGGGAGTAGTGACGCCCAATGATGAGATGGTCTGTCCTCAAAACAACAGCGTAGCTCCTTCTGACATGATACCTCAAGGAACTTTTGAGGCCAAAAAGTTGGCGACACGTCCTAAACTCTCTCTACCTCAAGACCACATAATAGCTGAAAGAAAGCGGCGTGAAAAGCTCAGCCAGCGCTTCATTGCTCTATCTGCCCTTGTTCCAGGACTACAAAAGATGGACAAAGCTACTGTTCTTGGAGATGCTATCAAGTACTTGCAGAAATTGCAAGAGAAGGTGAGGGATCTTGAGGAGGAACAGAAGATGAAGAAAACCGTGGAAACTGTGGTGGTTGTGAAGAAATCTCAACTACGCAATGATGTTGAAAACTCTTCTGCAGAATATGGCGGTCCCTTTGACGAGGAGCTGCCAGAAATTGAAGCAAGATTTTGTGATAGAAATGTCCTCGTAAGAATTCACTGTGAGAAAAGCAATGGAGTTGTGGAAAAAACAATCCATCAAATTGAGAAACTTCATCTAAAAGTCACCAATAGCAGTGTCATGACATTTGGGAGCTGTGCACTTGATATAACAATTATGGCTCAGATGGATATGGAATTTTACATGACAGTGAAGGATCTTGTGAGAAACCTACGCTCGGCTTTTGCGTCTTTCATCTGA 933 0.4073 MENISFIRGFPNQEIMEDPSLCLHQWHLNSIDESNSMPIASAFGDTLQHHSYIYPNFNHRTSVQTSQMLDTQFVSYPNLVSFVDSNHLNQLGVVTPNDEMVCPQNNSVAPSDMIPQGTFEAKKLATRPKLSLPQDHIIAERKRREKLSQRFIALSALVPGLQKMDKATVLGDAIKYLQKLQEKVRDLEEEQKMKKTVETVVVVKKSQLRNDVENSSAEYGGPFDEELPEIEARFCDRNVLVRIHCEKSNGVVEKTIHQIEKLHLKVTNSSVMTFGSCALDITIMAQMDMEFYMTVKDLVRNLRSAFASFI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03831 310 Pfam Helix-loop-helix DNA-binding domain 135 181 IPR011598 GO:0046983
Trre8g03831 310 PANTHER BHLH TRANSCRIPTION FACTOR 18 307 - -
Trre8g03831 310 SMART finulus 137 186 IPR011598 GO:0046983
Trre8g03831 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 194 IPR036638 GO:0046983
Trre8g03831 310 Gene3D - 133 205 IPR036638 GO:0046983
Trre8g03831 310 Coils Coil 170 197 - -
Trre8g03831 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03831 Trre-Chr8 43534407 43535777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03831 8 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.588 5.59e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g03831 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03831 - - vun:114179595 375.941