Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03827 ATGGCATCTAGCTCAATGTCAGCTTCTGGCTCATGGAGTGTTAAGGAGAATAAAGCCTTTGAAAGAGCTTTAGCTGTATATGACAAAGATACTCCTGATCGTTGGTACAATGTAGCTCATGCTGTTGGTGGCAAAACTCCAGAGGAAGTTAAGAAACACTATGAACTTCTTCTTGAAGATATTAAACATATTGAGTCAGGGAAAGTTCCATTCCCAAATTACAAGAAAATTTCAGCTTCTCATGAGGAGAAAAGGATGAGGAACCTAAACCTTCATTAA 279 0.3835 MASSSMSASGSWSVKENKAFERALAVYDKDTPDRWYNVAHAVGGKTPEEVKKHYELLLEDIKHIESGKVPFPNYKKISASHEEKRMRNLNLH 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03827 92 SMART sant 8 60 IPR001005 -
Trre8g03827 92 Gene3D - 2 71 - -
Trre8g03827 92 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Trre8g03827 92 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Trre8g03827 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 86 IPR044636 GO:0003700
Trre8g03827 92 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
Trre8g03827 92 FunFam Transcription factor SRM1 4 71 - -
Trre8g03827 92 CDD SANT 16 58 IPR001005 -
Trre8g03827 92 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03827 Trre-Chr8 43479637 43481378 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre8g03827 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03827 - - gmx:100818368 162.155