Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03811 ATGAGGAAAAATAAGAACCTTAGACTTAAGAAATCAGGAGAGGTGAGCAAATTGCCTAATCAGGACTTGAAACAACAAAAGATCAAAGAGGAACAGAAACTAAAGAAATTCAGACAAAAAGAAAAAATGTTGCCTGTGGAGTTGCTAGAGAAAAGAATACAGATCAATGAAGTTGGACGATCAGCTTATAGAATAAACTTCACAAAACTTTGTCATGCAACAAATTACTTTAGTAAGGACAATGTTATTGGGGTGGGAGTGATTGGAATAATGTACAAAGCAACATTTCCCAACAATTGTTTCTTGGCAGTTAAGAAACTACATGATTCTTCTCAATTGTGTATAAAAAGGTTTGAGCTAGAAATAATGATTTTGGGACAATATAGTCACCAAAACATACTTCCCTTGATTGGATTCTGCATAGAGGAAGAAAAAAATGAAAGAATTTTGGTGTATCAATACATGTCAAATGGAACACTTTCTGATTGGTTGAATGATGATACTACAAAATTAGGATGGATAAGGGTTATTAAAATTGCACTTGGTGTAGCAAGAGGTTTATGTTGTCTCCATCATAGTTTGCATATGGTTCATCTTAGTATAAGCTTAGAATGTATCTTGTTAGGGGACAATTTCGAGCCGAAAATATCCAATTTTGGAGGGGTCATGTTTATGAATAATGATATTGATTTGAACAAAAACATAAGATTTGAAAAGAAGGATGTTTATGACTTTGGTTGCTTGCTTTTTGAGTTGATTAAGGGGAAGAAATTTGGCCAAAGACATATTTGTTTAACCAATAATAATGTTCCGTTCGCGACGTACACATATCCAAATCCTATTAACCTATTGGAGGACCATTTTGGGTTCTATGATGCAATGGATGAAACACTAAACAAGATAGAATTTGAAGATGAGGTATCTTCTCTTCTTAGAGTTGCATGTGATTGTGTTCATCCTATCCTTGATAAAAGGCCTACTAAGCTTGAGGTGTACAATAAGATGGGAAACATATGGGAAAAAGATGAGATTTTTGATGAAGATCATGACCAATCTGGCCTAATGCATTACTCTTAA 1077 0.3398 MRKNKNLRLKKSGEVSKLPNQDLKQQKIKEEQKLKKFRQKEKMLPVELLEKRIQINEVGRSAYRINFTKLCHATNYFSKDNVIGVGVIGIMYKATFPNNCFLAVKKLHDSSQLCIKRFELEIMILGQYSHQNILPLIGFCIEEEKNERILVYQYMSNGTLSDWLNDDTTKLGWIRVIKIALGVARGLCCLHHSLHMVHLSISLECILLGDNFEPKISNFGGVMFMNNDIDLNKNIRFEKKDVYDFGCLLFELIKGKKFGQRHICLTNNNVPFATYTYPNPINLLEDHFGFYDAMDETLNKIEFEDEVSSLLRVACDCVHPILDKRPTKLEVYNKMGNIWEKDEIFDEDHDQSGLMHYS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03811 358 Gene3D Transferase(Phosphotransferase) domain 1 235 349 - -
Trre8g03811 358 Gene3D Transferase(Phosphotransferase) domain 1 155 234 - -
Trre8g03811 358 Pfam Protein tyrosine and serine/threonine kinase 80 221 IPR001245 GO:0004672|GO:0006468
Trre8g03811 358 PANTHER OS01G0253100 PROTEIN 33 335 - -
Trre8g03811 358 Gene3D Phosphorylase Kinase; domain 1 24 154 - -
Trre8g03811 358 Coils Coil 20 40 - -
Trre8g03811 358 ProSiteProfiles Protein kinase domain profile. 77 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03811 358 SUPERFAMILY Protein kinase-like (PK-like) 60 333 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03811 Trre-Chr8 43353391 43355259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03811 17 351 Receptor kinase-like Gene Family AT1G69990 28.889 1.19e-38 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre8g03811 PK_Tyr_Ser-Thr 6.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03811 - - tpra:123911597 433.721