Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03808 ATGAATACCTTCGAAGACAAGCACAACGATTTCTATCAATCGTTCAAAGTTGCTCTTATTGTTGGTTATGTTTTTTCACTCTCTTTGTACTGTTACGCTCACTTGTCTATTATGTTCTACTCCAAATGTGCATATTGGGTGCATCAATTGAAGAAGAAGAAAAACAATCACATAAACAAAGCTAAAGAATTGTGCAAATATATTTGCAGCCGGAGGAAACAAATGGTTGTTAGTCAGATGCACAAATTGATAAATTTCCGGCAGATACGCAAAGAAAGCAAAGAGATATCTGTTTTGTTGGAAAGACTCACCTCTACAATATGGTTAGAGGAACTTTCTGCTGCAACAGACGGTTTTGATATAGACAATGCCATTGGAGTGGGAAAGATGGGAATGATGTATCAAGGAAACCTACCTAATGGTCAATTACTAGCTGTTAAGAGACTATTAAACTCTCAATTATTTAAACGGCAGTTCCTTTCGGAAACAACGATTTTGTGCAAGTACAGACACAGAAATATAGTTCCCTTGCTTGGTTTCTGCATTGAAGGAAATGACAGGCTTTTGGCATATCCATACATGTCAAATGGAAGGCTTTCCAAATGGTTACATCCTTTGAAAAGTGAAGTTGTGAGATTGAAATGGCCTCAAAGAGCCAACATTGCACTTGGAATAGCAAGAGGGTTATCATGGCTTCATCATACATGTGATTTGCATACTGTGCATTTTAATATATGCTCACAATCTATATTGCTTGATGAGAATTTTGAACCCAAAATATCTAATTTTGGGGATGCCAAATTTATGAATCCCAACATTGACGATGATTTAGGCAAAATGTTTCAAGTGAACGATGGGAAGACGAAGAAAGATGTGTACGACTTTGGAAGTGTGCTTTTTGAACTGATTACGGGAGAAACATATAATGAACTGACTCGTTCATGCACCATAACTAATATATGTGGTAACCCTTCGAATTTCTATAATGCTATTGATAAATCTTTAACTGGGGAAGGATTTGAAAATGAAGTTTGTGCTCTTCTAAAGATTGCTTGTGAGTGTGTTAAGCCTTTACCAGATCAAAGACCAACAATGGTTGAAGTTTACAAGAATATAAGCAATGTAAAGAAGGGGCGACATGGCTGTAGTGATGATGATTTTGACGCATTAACGGGATCAGAAATTGTTTCTTCTATTTCTATAAACGAAATTATTGAGTTATAA 1224 0.3611 MNTFEDKHNDFYQSFKVALIVGYVFSLSLYCYAHLSIMFYSKCAYWVHQLKKKKNNHINKAKELCKYICSRRKQMVVSQMHKLINFRQIRKESKEISVLLERLTSTIWLEELSAATDGFDIDNAIGVGKMGMMYQGNLPNGQLLAVKRLLNSQLFKRQFLSETTILCKYRHRNIVPLLGFCIEGNDRLLAYPYMSNGRLSKWLHPLKSEVVRLKWPQRANIALGIARGLSWLHHTCDLHTVHFNICSQSILLDENFEPKISNFGDAKFMNPNIDDDLGKMFQVNDGKTKKDVYDFGSVLFELITGETYNELTRSCTITNICGNPSNFYNAIDKSLTGEGFENEVCALLKIACECVKPLPDQRPTMVEVYKNISNVKKGRHGCSDDDFDALTGSEIVSSISINEIIEL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03808 407 Pfam Protein tyrosine and serine/threonine kinase 121 371 IPR001245 GO:0004672|GO:0006468
Trre8g03808 407 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 50 376 - -
Trre8g03808 407 Gene3D Transferase(Phosphotransferase) domain 1 194 390 - -
Trre8g03808 407 SUPERFAMILY Protein kinase-like (PK-like) 99 370 IPR011009 -
Trre8g03808 407 ProSiteProfiles Protein kinase domain profile. 119 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03808 407 Gene3D Phosphorylase Kinase; domain 1 78 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03808 Trre-Chr8 43345101 43346985 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03808 51 387 Receptor kinase-like Gene Family AT1G27190 34.160 3.12e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Trre8g03808 PK_Tyr_Ser-Thr 8.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03808 - - tpra:123918107 679.863