Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03781 ATGATGGAGAAGAAACAGGGCAAAGAGGCAACGAAGTATTGTGAAAAGAAGGCTAAAAAGAATTCAAATGGGAAAGAAACTATAGGACCAAAGGCACCAAAGACTAAGAAGGAACTAAAGACTAAGAAGGCACCAAAGACAAAGAAGGGGAAGAATGGACCTACAGAAATTGGACAAAGATCGCAAGCACCACTTGCAATAGTTATGCTATTAACTATTATTCACAATCTATGCATCTTTATCGGCCACCATCCCTTCCGCCACGGTAAAGGATTGAGAAGAATAGAACCTATGAGTGGCCATGAAGTTGATAGAAAAATCACATGTTTGGAAGGACAAATCACAAGAAACGGGTCGCGACAACCCGTTCTCCTTGCTGAGAATGGGAGGCTTAAAAATGTAGGCATCATCGCAAAGAGGTTTGCGGAGTTGGCAATGGCATATAAGGGAGAAGTGAAAGCAATTGTGACCACTGTTTTGGTCCCCACTGCTATGTTTGGGTCGGTAAAGAGTAGTGCCATAACTTCACAGTTTATAAAGGACTCCAAAATTAAGTTAGGAAGTAAATTCCTCCATAGACAGTTTTGGTCCGATTGTTCAGGACGTCTATATGACGATGATCTACTCGACATCGATAAGTTACACGCTGAAGTAGATTGCCGTCGTGAAGAAACAATGACCAAAATTGACGATCAAGGTCAATGTGGTTCATGTTGGGCGCATGCAGCCACTGCAGCTGTAGAATCAGCGATTAGTATATACGGAGGAGAATTACAAAAGCTGTCTTCCCAGGAGCTGATTGAATGCGATTCCGGAAATGATGGATGCAATGGCGGTAGGGCAAATAAAACTTTTGAATACATATGTAAAAATGGTTTACATAAGTATGATGATTATCCGTCTAAAAAGGGTTCGAAAACATATATTGTGGGACACAAAGAAATACCATTCAAGAATGACGGGGATGACGAAAACCGTCTGAGACATGCCGTTTCCCGTCAGCCCGTCACTGTTTCAATAGCTGTTGGAGACGAGTTCAGCAGTTACAAAGGCAGACACGGTGTATTTAGGACCGAAACTGAGTTTTGGGTGCCTCATGCTGTTTTGGTCATAGGTTACGGAGTTTTAGACGGAACAAAATATTGA 1146 0.4206 MMEKKQGKEATKYCEKKAKKNSNGKETIGPKAPKTKKELKTKKAPKTKKGKNGPTEIGQRSQAPLAIVMLLTIIHNLCIFIGHHPFRHGKGLRRIEPMSGHEVDRKITCLEGQITRNGSRQPVLLAENGRLKNVGIIAKRFAELAMAYKGEVKAIVTTVLVPTAMFGSVKSSAITSQFIKDSKIKLGSKFLHRQFWSDCSGRLYDDDLLDIDKLHAEVDCRREETMTKIDDQGQCGSCWAHAATAAVESAISIYGGELQKLSSQELIECDSGNDGCNGGRANKTFEYICKNGLHKYDDYPSKKGSKTYIVGHKEIPFKNDGDDENRLRHAVSRQPVTVSIAVGDEFSSYKGRHGVFRTETEFWVPHAVLVIGYGVLDGTKY 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03781 381 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 364 374 IPR025660 -
Trre8g03781 381 CDD Peptidase_C1A 216 381 IPR039417 -
Trre8g03781 381 MobiDBLite consensus disorder prediction 1 58 - -
Trre8g03781 381 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 232 243 IPR000169 -
Trre8g03781 381 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 149 374 IPR013128 GO:0008234
Trre8g03781 381 PRINTS Papain cysteine protease (C1) family signature 232 247 IPR000668 GO:0006508|GO:0008234
Trre8g03781 381 PRINTS Papain cysteine protease (C1) family signature 366 376 IPR000668 GO:0006508|GO:0008234
Trre8g03781 381 SMART pept_c1 214 380 IPR000668 GO:0006508|GO:0008234
Trre8g03781 381 SUPERFAMILY Cysteine proteinases 205 381 IPR038765 -
Trre8g03781 381 Gene3D Cysteine proteinases 165 381 - -
Trre8g03781 381 MobiDBLite consensus disorder prediction 1 35 - -
Trre8g03781 381 Pfam Papain family cysteine protease 216 381 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03781 Trre-Chr8 43057822 43068653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03781 124 160 Primary Pumps ATPases AT5G13450 56.757 5.83e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03781 - K16290 tpra:123901995 151.754