Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03780 ATGATGGAGAAGAAACAGGGCAAAGAGGCAACGAAGTATTGTGAAAAGAAGGCTAAAAAGAATTCAAATGGGAAAGAAACTATAGGACCAAAGGCACCAAAGACTAAGAAGGAACTAAAGACTAAGAAGGCACCAAAGACAAAGAAGGGGAAGAATGGACCTACAGAAATTGGACAAAGATCGCAAGCACCACTTGCAATAGTTATGCTATTAACTATTATTCACAATCTATGCATCTTTATCGGCCACCATCCCTTCCGCCACGGTAAAGGATTGAGAAGAATAGAACCTATGAGTGGCCATGAAGTTGATAGAAAAATCACATGTTTGGAAGGACAAATCACAAGAAACGGGTCGCGACAACCCGTTCTCCTTGCTGAGAATGGGAGGCTTAAAAATGTAGGCATCATCGCAAAGAGGTTTGCGGAGTTGGCAATGGCATATAAGGGAGAAGTGAAAGCAATTGTGACCACTGTTTTGGTCCCCACTGCTATGTTTGGGTCGGTAAAGAGTAGTGCCATAACTTCACAGTTTATAAAGGACTCCAAAATTAAGTTGCAGTTAGGAAGTAAATTCCTCCATAGACAGTTTTGGTCCGATTGTTCAGGACGTCTATATGACGATGATCTACTCGACATCGATAAGTTACACGCTGAAGTAGATTGCCGTCGTGAAGAAACAATGACCAAAATTGACGATCAAGGTCAATGTGGTTCATGTTGGGCGCATGCAGCCACTGCAGCTGTAGAATCAGCGATTAGTATATACGGAGGAGAATTACAAAAGCTGTCTTCCCAGGAGCTGATTGAATGCGATTCCGGAAATGATGGATGCAATGGCGGTAGGGCAAATAAAACTTTTGAATACATATGTAAAAATGGTTTACATAAGTATGATGATTATCCGTCTAAAAAGGGTTCGAAAACATATATTGTGGGACACAAAGAAATACCATTCAAGAATGACGGGGATGACGAAAACCGTCTGAGACATGCCGTTTCCCGTCAGCCCGTCACTGTTTCAATAGCTGTTGGAGACGAGTTCAGCAGTTACAAAGGCAGACACGGTGTATTTAGGACCGAAACTGAGTTTTGGGTGCCTCATGCTGTTTTGGTCATAGGTTACGGAGTTTTAGACGGAACAAAATATTGA 1152 0.421 MMEKKQGKEATKYCEKKAKKNSNGKETIGPKAPKTKKELKTKKAPKTKKGKNGPTEIGQRSQAPLAIVMLLTIIHNLCIFIGHHPFRHGKGLRRIEPMSGHEVDRKITCLEGQITRNGSRQPVLLAENGRLKNVGIIAKRFAELAMAYKGEVKAIVTTVLVPTAMFGSVKSSAITSQFIKDSKIKLQLGSKFLHRQFWSDCSGRLYDDDLLDIDKLHAEVDCRREETMTKIDDQGQCGSCWAHAATAAVESAISIYGGELQKLSSQELIECDSGNDGCNGGRANKTFEYICKNGLHKYDDYPSKKGSKTYIVGHKEIPFKNDGDDENRLRHAVSRQPVTVSIAVGDEFSSYKGRHGVFRTETEFWVPHAVLVIGYGVLDGTKY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03780 383 PRINTS Papain cysteine protease (C1) family signature 368 378 IPR000668 GO:0006508|GO:0008234
Trre8g03780 383 PRINTS Papain cysteine protease (C1) family signature 234 249 IPR000668 GO:0006508|GO:0008234
Trre8g03780 383 CDD Peptidase_C1A 218 383 IPR039417 -
Trre8g03780 383 SMART pept_c1 216 382 IPR000668 GO:0006508|GO:0008234
Trre8g03780 383 MobiDBLite consensus disorder prediction 1 58 - -
Trre8g03780 383 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 234 245 IPR000169 -
Trre8g03780 383 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 366 376 IPR025660 -
Trre8g03780 383 SUPERFAMILY Cysteine proteinases 206 383 IPR038765 -
Trre8g03780 383 Pfam Papain family cysteine protease 218 383 IPR000668 GO:0006508|GO:0008234
Trre8g03780 383 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 149 376 IPR013128 GO:0008234
Trre8g03780 383 MobiDBLite consensus disorder prediction 1 35 - -
Trre8g03780 383 Gene3D Cysteine proteinases 170 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03780 Trre-Chr8 43057822 43068653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03780 124 160 Primary Pumps ATPases AT5G13450 56.757 5.93e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03780 - K16290 tpra:123901995 151.754