Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03743 ATGGAACAAGAAAATGCTTACAGATTAAATGTGTCTCTAGATGAGTTGGGTTTCAATGCTGAAAATGATAGCAATAATAGTGGAAAAAAGAGAAAGAAATACTATAATGAAGATGGCACAAGAGTGTTCAAATCAAAAAATCTTTTGGTTGAAAGGAGGAGGAGGGAGAAACACCATTCTAGGCTTTGCACTCTTCGATCTTTAATACCAATCATCACAAAGATGACCAAAGATAGCGTTATTGAAGATGCTATTACTTATACCAAGAAGCTTCAATATGAAGTTGACTATCTTACACAAGAGCTTTGTGCAATGCAAGAAGAAGAAAAGTTAGAGGAAAGAGCAGAGCCAAAAATAAATGAATTTTCTGCTGCTGAAGAGATGAAGAATTGGGGGATACAGGAAGAAGTTCAAGTGGAAAAAATTAGTGAAAATAAGCTCTGGATTAAGATAATCATTGAGAAAAATACAGGGAGGTTTATGAAATTAATGGAGACTATGAATGGTTTAGGCATTGAAATGATAGAAGCCAATGTTACAACCATAAAAGGAGCATATTTGATTATAACTTCTATTAAGGGTATTGGTTTTGATATAGATCAAGCAAAACATTTGTTGGCAGATATAATTAAAAGTATTTAG 642 0.3302 MEQENAYRLNVSLDELGFNAENDSNNSGKKRKKYYNEDGTRVFKSKNLLVERRRREKHHSRLCTLRSLIPIITKMTKDSVIEDAITYTKKLQYEVDYLTQELCAMQEEEKLEERAEPKINEFSAAEEMKNWGIQEEVQVEKISENKLWIKIIIEKNTGRFMKLMETMNGLGIEMIEANVTTIKGAYLIITSIKGIGFDIDQAKHLLADIIKSI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03743 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 91 IPR011598 GO:0046983
Trre8g03743 213 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 23 192 - -
Trre8g03743 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 107 IPR036638 GO:0046983
Trre8g03743 213 SMART finulus 48 97 IPR011598 GO:0046983
Trre8g03743 213 Gene3D - 35 121 IPR036638 GO:0046983
Trre8g03743 213 Pfam Helix-loop-helix DNA-binding domain 47 92 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03743 Trre-Chr8 42574984 42576778 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03743 43 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 45.763 9.55e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g03743 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03743 - - tpra:123918158 232.261