Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03740 ATGGAACAAGAAAATAACCATAATCTAAGTGTGTCTATGGAAGATTTAGGTTTCAATACTGGTTGTAACATGAAGGGAAAATTGAGGCAAAAGCATTATGATGATGTTGGTCCAAAAGTGTTCATGTCTAAGAACCTTGAGACAGAAAGAAAGAGAAGGGAGAAACTTGGTTCAAGACTTTTGGTGCTTAGGTCTCTAGTACCAATCATCACAAGTATGAACAAAGCAAGCATTATTGAGGATGCTATCACTTATACAAGGAAGTTGCAAAATGAAGTTGAGATTCTTACAAAAGAGCTTGGTGGATTGGAAGAAACAAGAAAGAAAAAAGCAGAGCAAAAAACATGTGAATCTTCTGCTGCTGGGGAAAAGATCAATATATCTTGGATAGAGGAGGAGATCCAGGTAGCAAAAATTGATGGAAATAATTTATGGGTGAAGATGATCATTGAGAATAAGAGAGGAAGGTTCAAGAAATTAATAGAGGACTTGGATAATTCAAACATTGAAATGATTGATGTCAGTGTTACAACTATGGAAGGAGCATATCTTATTACAGCCACATTAAAGGGTATGAGTGGTGAACCAATTGAGCTTTATCAAATTCCAACTATTATGAAGTTCAAGTAG 630 0.354 MEQENNHNLSVSMEDLGFNTGCNMKGKLRQKHYDDVGPKVFMSKNLETERKRREKLGSRLLVLRSLVPIITSMNKASIIEDAITYTRKLQNEVEILTKELGGLEETRKKKAEQKTCESSAAGEKINISWIEEEIQVAKIDGNNLWVKMIIENKRGRFKKLIEDLDNSNIEMIDVSVTTMEGAYLITATLKGMSGEPIELYQIPTIMKFK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03740 209 Gene3D - 42 107 IPR036638 GO:0046983
Trre8g03740 209 Coils Coil 86 113 - -
Trre8g03740 209 Pfam Helix-loop-helix DNA-binding domain 47 90 IPR011598 GO:0046983
Trre8g03740 209 SMART finulus 46 95 IPR011598 GO:0046983
Trre8g03740 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Trre8g03740 209 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 17 188 - -
Trre8g03740 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 104 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03740 Trre-Chr8 42548623 42550172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03740 41 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 43.949 2.93e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g03740 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03740 - - mtr:25493240 257.299