Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre8g03738 | ATGGAGTCTCATCTCCCTGAACACTTTAAATGTCCAATTTCTCTCGAAATAATGTCTGACCCTGTTATCCTCTCTTCCGGTCACACATTCGATCGTCCTTCAATCCAACGGTGGCTAGATGATGGTCATAGAACTTGTCCAATTACCAAATTACCCCTCCCTGATAATCCTACTCTCATCCCTAATCACGCTCTTCGTAGCTTAATCTCTACCTACACTCTCCTTCCACCACTTCACCAAATCATTTCCCAACCTGAAACCCTAATTTCAATTTTAACTAAATCTTCTTCTTCTTCTTCCGATTCCAAAATCGACTCGCTCCGTCAACTCGCTCGTCTTTCTAAACGCGACGCCAATTTCCGTCGCCGTCTTGTTGATTCCGGTGCTGTCTCCGCCGTTCTTTTCTGTCTTGATTCTTGTTCCGGTGAAACTAAATTGCAGGAGAAAGCTTTATCTCTTCTTCTTAATCTTAGTCTCGATGATGATAGTAAGATTGGACTTGTTGCTGAAGGTGCAATTGATCGTGTCGTCGCGTTTCTTCTCCGGGAAGCTTCGTCGGATTGTTGTGCTCTTGCGGCGACGATAATCACGAGTCTTGCTGTTGTGGAGGTTAACAAGGCGACTATTGGAGCTTTTCCGGGGGCAATTGAAGCTCTGGTGGCTATTCTCAAGGATGGGAAGGGGAGAGAGAAGAAAGAAGCTGCTACTGCGCTTTATGCGCTTTGCTGTTTTCGCGATAATCAGAAAAGAGCGGTGGATTGTGGCGCGGTGCCGATTTTAATGAGGAGTGTTGAATGTGGACTTGAAAGAGGTGTTGAGGTTATTGGTGTTTTGGTTAAGTGTAGGGAAGGTAGAGAACAATTGGAAAGTTATGGTGGGTGTGTGAAGATTCTTGTTCATGTGTTGAGGAATGGAAGCTCTAGAGGGATTCAGTATGCATTGTTGGCGCTTACTTCGCTTTGTTTTCATAGCAAGGAAATGCTTTTGGTGACTCTGCAAGAAGGGGTTTTGGATATCTGTCTTGGATTGGTTGATGATGATAATGAGAAAGTTAGGAGAAATTCATCCAATTTGATTCGGATTCTTCGCAGCGGTGGCAATCATTGGATGTATTGA | 1116 | 0.4427 | MESHLPEHFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDDGHRTCPITKLPLPDNPTLIPNHALRSLISTYTLLPPLHQIISQPETLISILTKSSSSSSDSKIDSLRQLARLSKRDANFRRRLVDSGAVSAVLFCLDSCSGETKLQEKALSLLLNLSLDDDSKIGLVAEGAIDRVVAFLLREASSDCCALAATIITSLAVVEVNKATIGAFPGAIEALVAILKDGKGREKKEAATALYALCCFRDNQKRAVDCGAVPILMRSVECGLERGVEVIGVLVKCREGREQLESYGGCVKILVHVLRNGSSRGIQYALLALTSLCFHSKEMLLVTLQEGVLDICLGLVDDDNEKVRRNSSNLIRILRSGGNHWMY | 371 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre8g03738 | 371 | SUPERFAMILY | RING/U-box | 4 | 73 | - | - | |
| Trre8g03738 | 371 | Gene3D | - | 83 | 208 | IPR011989 | - | |
| Trre8g03738 | 371 | Gene3D | - | 209 | 368 | IPR011989 | - | |
| Trre8g03738 | 371 | SMART | arm_5 | 160 | 201 | IPR000225 | GO:0005515 | |
| Trre8g03738 | 371 | SMART | arm_5 | 117 | 159 | IPR000225 | GO:0005515 | |
| Trre8g03738 | 371 | SMART | arm_5 | 324 | 364 | IPR000225 | GO:0005515 | |
| Trre8g03738 | 371 | SMART | arm_5 | 281 | 322 | IPR000225 | GO:0005515 | |
| Trre8g03738 | 371 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre8g03738 | 371 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre8g03738 | 371 | PANTHER | U BOX DOMAIN-CONTAINING | 5 | 354 | - | - | |
| Trre8g03738 | 371 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 74 | IPR013083 | - | |
| Trre8g03738 | 371 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre8g03738 | 371 | CDD | RING-Ubox_PUB | 6 | 55 | IPR045210 | - | |
| Trre8g03738 | 371 | SUPERFAMILY | ARM repeat | 73 | 364 | IPR016024 | - | |
| Trre8g03738 | 371 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 128 | 172 | IPR000225 | GO:0005515 | |
| Trre8g03738 | 371 | FunFam | RING-type E3 ubiquitin transferase | 4 | 75 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre8g03738 | Trre-Chr8 | 42525803 | 42526918 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre8g03738 | 1 | 362 | U-box Gene Family | AT4G21350 | 58.221 | 9.74e-137 | 393 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre8g03738 | - | - | gmx:100785141 | 497.664 |