Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03724 ATGATAAACAAGTTGTTAGTATTACCTAACAAATGGCTGCTAATTAAATCTTTGATTATACTTCTTACCTTCTCTTTTTGCTCTTGCTCTTCTGATACAATATCTTCTGACAAACCCATAAGAGATGGCGAGCTTCTGATTTCTAATTCTAAAACATTTGCTCTCGGATTCTTCACTCCAGGAAAATCCACCTCTCGCTATGTAGGAATTTGGTTCAACAATTTGCCAATCCAAACTGTTGTTTGGGTTGCAAATAGAGATAGTCCAATCAATGACACTTCTGGAATCCTATCGATCGACCCAGATGGAAATCTAGTACTCCACCATAACTTTAGCACAATTCCCATTTGGTCTACCAATGTTTCGTTCCCACAATCACAAAGAAATAGCAGCAGGGTTATAGCTCAACTAACGGATATAGCAAACCTTGTTCTTATGCTAAGCAACACCAAAACTGTATTATGGGAAAGCTTTGATCATCCAACAGACACCATGCTTCCATATCAAAGGCTTGGTTTTGATAGAAAAACTAATCAAAGTTGGTCCCTTCGATCCTGGAAGACAGATGATGACCCTGGAAATGGTGCATCCAAAGTGAAATTCAGCACCAATATTGGCAAACATCAAATGCTTATGTACGACCATGATCTTCCTTGGTGGCGTGCTGGACATTGGAACGGAGAATTATTGGTAGGTCTACCTTATATGAAACGAGATACGGACATTATTAACATTTCTTTTGGTGAAGATGACAACTATGTAGCACTCTCATACAAAATGTATGATACGTCTCTCATGTCTAGGGTAGTGGTTCAGCAATCTGGTTTCGTACAAGCATTCACGTGGGAAAGTCAAAAGAGCCAATGGGCCCAGTACTGGTCTGAACCAAGAAACCAATGCGACAACTATGGAACATGTGGAACAAACAGTAATTGTGACCCTTCGAACTTCGTCGGTTTTAAGTGTGCATGTTTACCTGGTTTTGAACCAAAATTTCCACGTGATTGGTATGGGAGTAGAGATGGGTCAGGAGGGTGTGTAAGAAAGAAAGGTGTATCTGTTTGTGGGAATGGTGAAGGGTTTGTCAAAGTTGAAAGCTTGAAAGTTCCTGATATATCTGTTGCAGTTGCCAAAGGTGGTTTGAGTTTGGAAGAATGTGAGAAAGAATGCTTAAGAAACTGCTCTTGTACTGCCTATGCAGTTGCTGATGTGACAAATGGTGGAAGTGGATGTTTGACATGGCACGGAAATTTAACAGACATTCAAAAACTTACCGATCAAGGCCAAGATTTATTTTTACGTGTCGATAAAGTGGAACTAGCCGAGTACTATAAAAAAAGCAAAGGAGTCCTTGATAAAAAGATTTTGTCTGCAATTCTTGTAGCTTCTATAGTTGCTATTATCGTCCTCCTCACATGTGTGAATTACCTGTGGAAGAAAAAAAGAAAGGATAAAATGATGCGGCAATTAAACCAAGATTCCTCTGAAGAAGAGAATGGTGCTCAAAGCAGCCCACATCCAAATCTACCATTTTTTAGCTTTAAAACAATAATGACAGCTACAAGAAACTGCGGTCATGAGAATAAGCTTGGACAAGGTGGATTTGGCTCTGTCTATAAGGGTTGCTTGATTAATGGACAAGAGATAGCAGTTAAAAGATTATCCAAACATTCAGGTCAAGGCAAAGTAGAGTTTAAAAATGAAGTTAGACTTTTAGTTAAACTCCAACACAGAAATCTAGTAAGGTTGCTCGGTTGTTGCTTTGAAAAAGAAGAAAGGATGCTAGTTTATGAATACCTACCAAACAAAAGCCTAGACTTCTTCATATTCGATCAAAACCAAAGGTCATCATTGGATTGGGGTAAGCGCTTTGAAATTATTTGTGGGATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCTTAAAATAATTCATAGAGATCTAAAAGCCAGCAATGTTCTCCTTGATGCTGCAATGAATCCCAAAATATCAGATTTCGGTATGGCTAGAATATTTGGAGAAGATGAAATCCAAGCAAACACAAGAAGAGTGGTTGGAACATATGGATATATGTCACCAGAATATGCAATGGAAGGATGTTATTCAACAAAATCTGATGTCTTCAGTTATGGTGTCTTACTTCTGGAGATTATTGCTGGCCAAAGAAACACACATTGTGAAACAGGAAGAGCCTCCCCAAATTTAATTGGACATGTGTGGACACTGTGGACAGAAGGAAGGGCCTTGGAAACTGTTGATTCAACACTAAATCAGTCATATCCTCCTAATATAGTTCGGAGATGCATTCAAATTGGACTCTTGTGTGTGCAAGAAAATGCCATGGATAGACCAACAATGTCAGAAGTTGTTTTCATGCTATGCAATGAAACACCTCTTTGCCAACCTCAAAAACCAGCATTCTTATTGATCGGCAAACAAGATTTGCAAGAGTCATCGACATCAGGAGGAGGATCTTCAATAAATGAATTAACAGAAACTACCATCAGTGCTCGTTAA 2523 0.388 MINKLLVLPNKWLLIKSLIILLTFSFCSCSSDTISSDKPIRDGELLISNSKTFALGFFTPGKSTSRYVGIWFNNLPIQTVVWVANRDSPINDTSGILSIDPDGNLVLHHNFSTIPIWSTNVSFPQSQRNSSRVIAQLTDIANLVLMLSNTKTVLWESFDHPTDTMLPYQRLGFDRKTNQSWSLRSWKTDDDPGNGASKVKFSTNIGKHQMLMYDHDLPWWRAGHWNGELLVGLPYMKRDTDIINISFGEDDNYVALSYKMYDTSLMSRVVVQQSGFVQAFTWESQKSQWAQYWSEPRNQCDNYGTCGTNSNCDPSNFVGFKCACLPGFEPKFPRDWYGSRDGSGGCVRKKGVSVCGNGEGFVKVESLKVPDISVAVAKGGLSLEECEKECLRNCSCTAYAVADVTNGGSGCLTWHGNLTDIQKLTDQGQDLFLRVDKVELAEYYKKSKGVLDKKILSAILVASIVAIIVLLTCVNYLWKKKRKDKMMRQLNQDSSEEENGAQSSPHPNLPFFSFKTIMTATRNCGHENKLGQGGFGSVYKGCLINGQEIAVKRLSKHSGQGKVEFKNEVRLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDQNQRSSLDWGKRFEIICGIARGVLYLHQDSRLKIIHRDLKASNVLLDAAMNPKISDFGMARIFGEDEIQANTRRVVGTYGYMSPEYAMEGCYSTKSDVFSYGVLLLEIIAGQRNTHCETGRASPNLIGHVWTLWTEGRALETVDSTLNQSYPPNIVRRCIQIGLLCVQENAMDRPTMSEVVFMLCNETPLCQPQKPAFLLIGKQDLQESSTSGGGSSINELTETTISAR 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03724 840 SMART serkin_6 527 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03724 840 MobiDBLite consensus disorder prediction 488 507 - -
Trre8g03724 840 ProSiteProfiles PAN/Apple domain profile. 355 436 IPR003609 -
Trre8g03724 840 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Trre8g03724 840 CDD B_lectin 37 161 IPR001480 -
Trre8g03724 840 CDD STKc_IRAK 530 797 - -
Trre8g03724 840 ProSiteProfiles Protein kinase domain profile. 524 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03724 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Trre8g03724 840 Gene3D - 24 159 IPR036426 -
Trre8g03724 840 Gene3D Hepatocyte Growth Factor 353 433 - -
Trre8g03724 840 Gene3D Transferase(Phosphotransferase) domain 1 600 803 - -
Trre8g03724 840 MobiDBLite consensus disorder prediction 818 840 - -
Trre8g03724 840 Pfam Protein tyrosine and serine/threonine kinase 527 793 IPR001245 GO:0004672|GO:0006468
Trre8g03724 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 192 IPR036426 -
Trre8g03724 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 487 599 - -
Trre8g03724 840 ProSiteProfiles Bulb-type lectin domain profile. 31 158 IPR001480 -
Trre8g03724 840 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Trre8g03724 840 ProSiteProfiles EGF-like domain profile. 296 334 IPR000742 -
Trre8g03724 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 803 - -
Trre8g03724 840 SMART blect_4 37 161 IPR001480 -
Trre8g03724 840 Pfam D-mannose binding lectin 79 187 IPR001480 -
Trre8g03724 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 158 - -
Trre8g03724 840 SMART ntp_6 356 435 IPR003609 -
Trre8g03724 840 Pfam S-locus glycoprotein domain 220 332 IPR000858 GO:0048544
Trre8g03724 840 Gene3D Phosphorylase Kinase; domain 1 498 599 - -
Trre8g03724 840 Pfam PAN-like domain 355 421 IPR003609 -
Trre8g03724 840 CDD PAN_AP_plant 356 435 - -
Trre8g03724 840 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 786 - -
Trre8g03724 840 SUPERFAMILY Protein kinase-like (PK-like) 505 804 IPR011009 -
Trre8g03724 840 PIRSF SRK 5 840 IPR024171 GO:0004674
Trre8g03724 840 MobiDBLite consensus disorder prediction 493 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03724 Trre-Chr8 42429420 42432977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03724 466 811 Receptor kinase-like Gene Family AT3G45860 55.587 3.37e-123 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre8g03724 PK_Tyr_Ser-Thr 5.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03724 - - tpra:123918163 1405.96