Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03714 ATGGCGTCGTCACTCCCTCACTTAGACGACGATTCCGTCTCCCCCTCCCCCCGCTCCGATCACTTCCACGACGCATCTCCACGTGTCCGCTTCATGTGTAGTTTCGGCGGCAAAATCCTCCCTCGTCCCTCCGACAATCAGCTCCGTTATGTCGGTGGCGACACCCGAATCGTCGCTGTTAACCGTTCCATTTCATTCTCCGCTCTTGTCCACAAACTCTCTAAACTCTCCGGCATGACCAACATAACAGCAAAGTACCAACTTCCAAACGAAGACTTAGACGCGTTGATTACAGTAACAACAGACGAAGATGTAGATAACATGATAGACGAATACGACCGCGTTTCACTGAATGAAAACCCAAGAGCGGCTCGACTAAGAGTCTTTCTTTTCCCAGAAGGAGAAGATTCTCGATCCAATAGTATCAGCTCGCTTTTAAACGGCTCAACTAAAAGAGAAAATTGGTTTATGGATGCTTTAAACGGTGGCGTTTCAGGACTCGAACGAGGTCGTTCAGAAGCTTCTTCTATGGTTTCTGAAGTACCCGATTATTTATTCGGGTTGGATAATAACTCCGAAGAAACTCAACAACAGAATCGTGAATTACGACCCAAAGAACGAAACGTTCTTCAACAATTAGATAATGTTTCGAATTCGGATCCGGGTTCTCCTGCTCCGGTTGTTTCTTCTCCGTTTTGTTCTACTTCATCTGCTTCTATTCCGAATCTTCCACCGGTTAAAACTAAACCCGAAAACCCGGTTTATGAACCTGATTTTAAAACAAGTCAAATTGAAACTGAAACGGTTTTGCAACCACAACTAAAATTGGGTAATTACCAGATTAACCCTGGAGTTCACTACCCTCCTCAAGTTCAACCACAACAACATGAAGCTATTTATTCGGGTCATCATGGACAACCGGTTCCGGTTTATTATATTCAGGGCTCGGTTCAACCCGGGAATGTGCCGGTTCAACCGGTTCATATGCAAGGACATTATCCTCCCTATGTTCAACAACCGTATCATGCGGTTATGCAAGCTCAGGTTCCAATTGGGTATCATCATTTGGTTCCAGGTTCGGGTCAAGTATATGGGGCGGGTATGAGGCATATGGCTCCAGTGCAGCCCTATAGTCCTACCGCGGTGGTTCACGACGGTTTGAAACAGCAAGTATATCAAGGTGTTCAAAACCCAGGTCCGGTTCCGGTTTACCAGGGGATGCCGCCGGTGACAGGTGGGGATGAACACCAGAGAGGTGGAACGGGTCGGGGCACCAACTCTCCACATAATTGA 1293 0.4695 MASSLPHLDDDSVSPSPRSDHFHDASPRVRFMCSFGGKILPRPSDNQLRYVGGDTRIVAVNRSISFSALVHKLSKLSGMTNITAKYQLPNEDLDALITVTTDEDVDNMIDEYDRVSLNENPRAARLRVFLFPEGEDSRSNSISSLLNGSTKRENWFMDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNNSEETQQQNRELRPKERNVLQQLDNVSNSDPGSPAPVVSSPFCSTSSASIPNLPPVKTKPENPVYEPDFKTSQIETETVLQPQLKLGNYQINPGVHYPPQVQPQQHEAIYSGHHGQPVPVYYIQGSVQPGNVPVQPVHMQGHYPPYVQQPYHAVMQAQVPIGYHHLVPGSGQVYGAGMRHMAPVQPYSPTAVVHDGLKQQVYQGVQNPGPVPVYQGMPPVTGGDEHQRGGTGRGTNSPHN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03714 430 CDD PB1_UP2 32 131 - -
Trre8g03714 430 PANTHER OS05G0427100 PROTEIN-RELATED 11 364 - -
Trre8g03714 430 MobiDBLite consensus disorder prediction 408 430 - -
Trre8g03714 430 Pfam PB1 domain 45 132 IPR000270 GO:0005515
Trre8g03714 430 Gene3D - 49 132 - -
Trre8g03714 430 MobiDBLite consensus disorder prediction 1 23 - -
Trre8g03714 430 MobiDBLite consensus disorder prediction 214 236 - -
Trre8g03714 430 SMART PB1_new 43 131 IPR000270 GO:0005515
Trre8g03714 430 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 48 133 - -
Trre8g03714 430 SUPERFAMILY CAD & PB1 domains 44 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03714 Trre-Chr8 42334367 42335753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03714 18 175 MAP Kinase Kinase Kinase AT3G46920 39.623 3.82e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03714 - - aprc:113858359 588.571