Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03709 ATGGCGAGAAAGTCGTCATCGGCAAATGAAGAGATTCTACCGGACGAACTCCGGTGTGGACGTACCGACGGGAAACAATGGCGGTGCAAGCGGAGAGTGATGGATAATCTGAAACTATGCGAGATTCACTATCTTCAAGGTAAGCATCGTCAATACAGAGAGAAAGTTCCCGAGTCTCTGAAGCTTCAGAGAAAGCGTAAAAACAAGGACGACGAAGTTACAGAAACTGTTGTAATCGATAATGCGGAAGCTAGGGTACCGAGGGAGCTGAAAATGGAGCTGAGAAAGAACAAGAAGAAGAAGGTGAAGCTCGCAGAGAGTTCGGAATCGGTTACGGTAACCGATTCTGCTTCAGGTTCTGGTTCTGTTAGGAAGAAGACAATGAAGCAATGTGATTCACAATTAGATCTTATAAGAATGGTTTTGGAAAGAGAAGTTGAGAAGAGAAAAAAGAACAACAATGAGAATAAGAAGAATAAGAAAAAGAAGAAGAAAATGAAGAAAAAAGAGATTAAAGTAGAAGAAGATGAATTCAATGAAGGAGAATTAAGGAGAGAGTTACCAAATGGTGTTATGGAAATATCTCCAGCTTCAACACCTCATGATTATAACAATGTGAGTTCTCATTGTGATGTGAAAGTTGGTGTTGATCATAATAAGGTTGTAGCTGTAACGCCGCATTACTTCAGGTCGAAGAATGTTGATAGGGTTGCTGTTGGAAAGTTGCAAGTTGTGCCTTATGGACCAAGCTTGAAGAAGGGAAATACTAAGAGGAAGTGTCACTCGTGCCAGAGAAGTGAATCTTTGAATCTCGTCCAGTGTTCGAGCTGTAACAAGGAGTTTTTCTGCTTTGATTGCATTAGAGATCGGTATCTTGAATCAAAAAAGGAAGTTAAGAAGGCGTGCCCAGTTTGTCAAGGAACTTGCACTTGTAAGGTTTGCTTGGCAGGCCAATCTAACGACAGTGAAAGTAAGTCCTATTTATCGGGTAAAAGTAGAGTTGATAGAATACTCCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCGAGTAAGTGAAAACCTAGAATCTGAGCTAGAAACAGAAGCAAAAATCAAAGGGAAAAACATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGTTATAATGAAAATATTTATTGCAATCACTGCAAAACACCCATCCTGGATCTCCATAGAAGCTGTGCTAGTTGTTCGTATAGCCTATGCTTAAGTTGTTGTGAGAAATCATCTCAAGGAAGAACTTCTGGAGAAATTAACTCATCAATGCTGAAGCTACCTGATCAAATGAAAGCTCCTGTTGACAGTGAGGGCCATGTTTTGGATCAGAAGGACATTTCTTGTGACAATTTAACTCCTACTTTAACATTGCATGAGGAGACAAATTGCAATGATATTGAAAAAGTATCGTGCCCTCCTACGGAGCTTGGTGGTTGTGGTACAGGCCTGCTAGATTTAAGATGCATGTTTCACATGACTTTGCTCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCCGACACTTTGGATAAAAGTTCAAGCTGCTCACTGTGTTTTGACACCGACCTCAATAGTAACCAATATAACCAGTTGCAGAAAGCAGCTGAGAGAGAAGATTCATCAGATAATTGTTTGTTCTGTCCCACAGTTTTGGACATCAATGGTAATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTGGTCCAAGATGTGCTCCAGAGTACATCAAACCTCAGTTGGAATCCACTGTTCATGTTCTGTACTTATCTTGAGCAGAGCATTACAAAGTATGAGAATAATAAAGAGTTACTTGAATCCTGTTTGGATTGGTGTGAGGTGGAAATAAACATTAGGCAATATTTTACCGGGTCTCTCAAATGTCGTCCTCAGAGAAACACTTGGCATGAGATGCTGAAACTGAAGGGATGGCTGTCTTCCCAAGTATTCAAAGAGGAGTTTCCAGCCCATTTTTCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCTGTGTCTGGTCCTCTGAATTTAGCTGCAAATTTGCCACTCGGGAGTGTGAAACATGACATTGGGCCATATGTCTATATTTCATATGGCAGTGCCGACATAGATGCTGATTCTGTGACAAAACTCTGCCGCGACTCATATGATGTGGTTAATATTATGACACATTCTGCGGATGTCCCTCTCTCTACAGAACAGCTTACAAAACTAAGAAAATTGCTGAAAAAGCACAAAGCTCTGTGTCAAGTGGAGTCTGTTGCTACTGAGCAGTTACCTGAACAGGAAGTGAAAGGAATGACATTATCACATGCTGAAGAAATGGAACAAAAAAGTTTGCGGAGTATGGGGAAAGAAGGTATGGAGTTTTTAAGGAGAGTCGATAGAACATCTTGCATCTCCTCAACTGGAGCTAAAAAAGCTTCTACCCAGAGTATAGACAACAATATTTCCCAGGATGGAGAGCGTGGCGTCTTTTCTGATTCTGAACCCTCTCTTGATGGAACTGTTCATACCACCAATTTGTCAGAACACAATAATCCTAGAAGTCCCTCTGAAAGCTCCAACAGTTATAAGAAAAAGTTTCCTGAGCATTCAGGTGCCCAGTGGGATGTCTTTCGTAGACAAGATGTGCCAAAGCTCATAGAATATATTAAAAGACATTGTGATGAACTTACTTCTACCCATGACTCTCACAAGAAGATGGTTCATCCGATTCTAGATCAGAGCATTTTTCTTGACAATACTCACAAAAAGAGACTGAAGGAGGAGTTTAAGATTGAACCATGGACTTTCCAGCAACATGTTGGAGAAGCTGTTATCATTCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTGTTGTGTCCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACCGAGTGTATCCAGTTGATTGATGAGCTCAGACAGTTACCTGAAGATCATAAAGCAAAAGTAGACAAGCTGGAGGTGAAGAAAATGGCGCTACATAGTATGAGTACAGCAATTAAAGAAATACGCCAGCTTACATGCAAAACATAA 3123 0.4041 MARKSSSANEEILPDELRCGRTDGKQWRCKRRVMDNLKLCEIHYLQGKHRQYREKVPESLKLQRKRKNKDDEVTETVVIDNAEARVPRELKMELRKNKKKKVKLAESSESVTVTDSASGSGSVRKKTMKQCDSQLDLIRMVLEREVEKRKKNNNENKKNKKKKKKMKKKEIKVEEDEFNEGELRRELPNGVMEISPASTPHDYNNVSSHCDVKVGVDHNKVVAVTPHYFRSKNVDRVAVGKLQVVPYGPSLKKGNTKRKCHSCQRSESLNLVQCSSCNKEFFCFDCIRDRYLESKKEVKKACPVCQGTCTCKVCLAGQSNDSESKSYLSGKSRVDRILHFHYLICMLLPVLKRVSENLESELETEAKIKGKNISDIQIKQVEFGYNENIYCNHCKTPILDLHRSCASCSYSLCLSCCEKSSQGRTSGEINSSMLKLPDQMKAPVDSEGHVLDQKDISCDNLTPTLTLHEETNCNDIEKVSCPPTELGGCGTGLLDLRCMFHMTLLKEMEVKAEEIVCSYDFPDTLDKSSSCSLCFDTDLNSNQYNQLQKAAEREDSSDNCLFCPTVLDINGNNFEHFQKHWGKGHPIVVQDVLQSTSNLSWNPLFMFCTYLEQSITKYENNKELLESCLDWCEVEINIRQYFTGSLKCRPQRNTWHEMLKLKGWLSSQVFKEEFPAHFSEVIDALPVQEYMNPVSGPLNLAANLPLGSVKHDIGPYVYISYGSADIDADSVTKLCRDSYDVVNIMTHSADVPLSTEQLTKLRKLLKKHKALCQVESVATEQLPEQEVKGMTLSHAEEMEQKSLRSMGKEGMEFLRRVDRTSCISSTGAKKASTQSIDNNISQDGERGVFSDSEPSLDGTVHTTNLSEHNNPRSPSESSNSYKKKFPEHSGAQWDVFRRQDVPKLIEYIKRHCDELTSTHDSHKKMVHPILDQSIFLDNTHKKRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHAVLEFVSPENVTECIQLIDELRQLPEDHKAKVDKLEVKKMALHSMSTAIKEIRQLTCKT 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03709 1040 MobiDBLite consensus disorder prediction 154 168 - -
Trre8g03709 1040 ProSiteProfiles WRC domain profile. 13 59 IPR014977 -
Trre8g03709 1040 ProSiteProfiles Zinc finger RING-type profile. 260 306 IPR001841 -
Trre8g03709 1040 MobiDBLite consensus disorder prediction 96 128 - -
Trre8g03709 1040 Coils Coil 143 177 - -
Trre8g03709 1040 Gene3D Cupin 565 1012 - -
Trre8g03709 1040 ProSiteProfiles JmjC domain profile. 693 1003 IPR003347 -
Trre8g03709 1040 MobiDBLite consensus disorder prediction 144 172 - -
Trre8g03709 1040 MobiDBLite consensus disorder prediction 855 880 - -
Trre8g03709 1040 MobiDBLite consensus disorder prediction 824 886 - -
Trre8g03709 1040 MobiDBLite consensus disorder prediction 824 848 - -
Trre8g03709 1040 SMART cupin_9 674 1003 IPR003347 -
Trre8g03709 1040 MobiDBLite consensus disorder prediction 107 128 - -
Trre8g03709 1040 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 15 1038 IPR045109 GO:0032454|GO:0033169
Trre8g03709 1040 Pfam JmjC domain, hydroxylase 889 981 IPR003347 -
Trre8g03709 1040 Pfam WRC 14 55 IPR014977 -
Trre8g03709 1040 SUPERFAMILY Clavaminate synthase-like 571 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03709 Trre-Chr8 42226546 42232610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03709 8 50 GRF Transcription Factor Family AT4G37740 46.512 3.57e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre8g03709 JmjC 6.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03709 K15601 - gmx:100810673 1389.02