Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03707 ATGGCTTCTAAAAATGGCTTATACAAACCAAGTGAGCTTTTCCAAGCTCAAGCTCACTTGTACAAAGTGATGTATAGCTTCCTCAATCCAATGTCTGTCAAATGGGCCATTGATCTTAAAATACCAGATATCATCCACAATCATGCCCAACCCATTACTCTTTCTGAACTTGTTTCAGCTCTTCAAGTTCCACAATCCAAACAAACATGCGTTCAACGACTCATGCGATTATTAGCACATATTGATCTCTTTGCAATTGTCAAAATTCAAGACAACAAAGAAGCATATGCTCTTACTCCAACATCACAACTTCTTGTCTCTGGCACTGATCATTGTTTATCTTCCATGGTTCGGTTTCTAAACACTCCCATTCTTGTTGATTCGTATAATCATTTAGCGAAATGGACTTCTGGGGAGGATCTCACCGTTGTTGAGACTGCATTAGGCCCGGAAAGTTATTGGGATTTCATTCATCAAAATTATGAATACTTGAATACTTTCAATGAGGCTATGGAAAGTGATTCTCATGTTGTGAGGTTGGCTTTGAAAGATTGTAGGTCTGTTTTTGAAGGGATTGGTTCGTTGGTCGATGTTGGTGGTGGAACTGGAAACACAGCTAAGATTATATGCGAGACATTTCCGGAGCTCAAGTACATTGTCTTGGACCTTCCACAGGTTGTTTCCGGTTTAGCAGGAAGCAATAACTTGAGTTTTGTTGGTGGGAACATGTTTAAGTCTATCCCTCAAGCCGATGCTGTTTTGCTCAAGTGGGTGTTACATAATTGGAGTGATGATGATTGCATAAAGATACTCAAAAATTGCAAGAAGGCTATATCAGGAAAAGGGAAAGGAGGAAAAGTTATCATCATAGATGTAGTAATAAATGAAAAACAAGATGAGCATGAAATGACAGAAGTAAAGCTTTTACTTGATGTGATTATGATGACCAGTCTCAATGGAAAAGAGAGAAATGAAAAGGAATGGAAGCAACTTTTCTTACAAGCTGGCTTCAAATCTTACAAGATATTCCCTACATTTGGTTTTAGGTCTCTTATTGAGCTTTATCCTTAA 1071 0.3819 MASKNGLYKPSELFQAQAHLYKVMYSFLNPMSVKWAIDLKIPDIIHNHAQPITLSELVSALQVPQSKQTCVQRLMRLLAHIDLFAIVKIQDNKEAYALTPTSQLLVSGTDHCLSSMVRFLNTPILVDSYNHLAKWTSGEDLTVVETALGPESYWDFIHQNYEYLNTFNEAMESDSHVVRLALKDCRSVFEGIGSLVDVGGGTGNTAKIICETFPELKYIVLDLPQVVSGLAGSNNLSFVGGNMFKSIPQADAVLLKWVLHNWSDDDCIKILKNCKKAISGKGKGGKVIIIDVVINEKQDEHEMTEVKLLLDVIMMTSLNGKERNEKEWKQLFLQAGFKSYKIFPTFGFRSLIELYP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03707 356 Pfam O-methyltransferase domain 130 338 IPR001077 GO:0008171
Trre8g03707 356 FunFam Coniferyl alcohol 9-O-methyltransferase 4 105 - -
Trre8g03707 356 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Trre8g03707 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Trre8g03707 356 Gene3D Vaccinia Virus protein VP39 107 356 IPR029063 -
Trre8g03707 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 354 IPR029063 -
Trre8g03707 356 CDD AdoMet_MTases 195 294 - -
Trre8g03707 356 Gene3D - 2 105 IPR036388 -
Trre8g03707 356 FunFam O-methyltransferase ZRP4 107 356 - -
Trre8g03707 356 PANTHER O-METHYLTRANSFERASE 13 341 IPR016461 GO:0008168
Trre8g03707 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 356 IPR016461 GO:0008168
Trre8g03707 356 SUPERFAMILY "Winged helix" DNA-binding domain 11 108 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03707 Trre-Chr8 42158835 42160248 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03707 10 354 Monolignol Biosynthesis Gene Families AT5G54160 29.888 1.03e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03707 K22588 K13262 gmx:100818724 428.713