Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03702 ATGGGAAGAGTACCTTGTTGTGAAAAGAATGGTCTCAAGAGAGGACCATGGACACAAGAAGAAGACCAAAAACTCACTGATTACATTCATAAACATGGTTATGGTAATTGGAGATTACTCCCAATGAATGCTGGATTACAAAGGTGTGGAAAAAGTTGTCGTCTGCGTTGGACAAACTATCTTCGACCAGATATAAAGCGAGGTCGATTCTCTTTTGAAGAAGAAGAAACCATAATTCAGCTACATAGCATTCTCGGCAACAAGTGGTCTGCAATTGCTGCTAGGCTACCAGGAAGAACGGACAATGAAATCAAGAATTATTGGAACACTCATATTAGGAAAAGATTATTAAGGATGGGAATTGATCCTGTGACACATAATCCAAGATTTGATCTTTTGGACTTTTCTTCTATCCAAAATTCATCTCTATCACAAATGAACATTCAAAGGCTAATTGGTACACAACAATTAGGGAACCCTCATGAGATTCTAAAGTTTGCTTCATCACTCTTTTCCTCTCAAAATGGACAAGAGAATCACCAAATTGATCAAAATCAACAAATTATCTCACACTTGGATCAAGAAGCTTACAATATGTTGTTGAATAATCCACCTTGTGATAATTCAATGACTTTGCCTCAAACACACTTGGTTGAATCAAATGAGAATCTATACTCATCATTTTTACCTGAATTTTGCTACCAACAACATGAACATGTTCAATTAAGTGATTATTTGCATTGCAATGGAATTGCTCCAAGTACTATAACAGAGAATTTTGTTCATCAATTACCAAGCTATGATTACTTAAGTTCTGATTATCATGGAAATGGCATAATTATGGATCCTATCATATCAGAAACCTCAAACTTTCATTCCAATAACAACAATCAGAACTTCAATTTCGCTTCTTCGGTTCTATCTACGCCTTCATCGAGTACCACACCGTTGAATTCGAATTCGACAAATATCAATGGAAGCAGTATCACTGAAGATGAGACAGAAAGCTATGTTAGCAGCAACATGTTTCAATTTCAAATCTCAGATATCTTAGGTGTGAATGAGTTCATGTAG 1074 0.3585 MGRVPCCEKNGLKRGPWTQEEDQKLTDYIHKHGYGNWRLLPMNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHNPRFDLLDFSSIQNSSLSQMNIQRLIGTQQLGNPHEILKFASSLFSSQNGQENHQIDQNQQIISHLDQEAYNMLLNNPPCDNSMTLPQTHLVESNENLYSSFLPEFCYQQHEHVQLSDYLHCNGIAPSTITENFVHQLPSYDYLSSDYHGNGIIMDPIISETSNFHSNNNNQNFNFASSVLSTPSSSTTPLNSNSTNINGSSITEDETESYVSSNMFQFQISDILGVNEFM 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03702 357 MobiDBLite consensus disorder prediction 311 330 - -
Trre8g03702 357 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre8g03702 357 CDD SANT 69 112 IPR001005 -
Trre8g03702 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre8g03702 357 FunFam Transcription factor MYB39 69 130 - -
Trre8g03702 357 CDD SANT 16 61 IPR001005 -
Trre8g03702 357 FunFam MYB-related transcription factor 13 66 - -
Trre8g03702 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 271 - -
Trre8g03702 357 SMART sant 13 63 IPR001005 -
Trre8g03702 357 SMART sant 66 114 IPR001005 -
Trre8g03702 357 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre8g03702 357 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre8g03702 357 Gene3D - 69 116 - -
Trre8g03702 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre8g03702 357 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre8g03702 357 Gene3D - 14 66 - -
Trre8g03702 357 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03702 Trre-Chr8 42097145 42098476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03702 1 357 MYB Transcription Factor Family AT4G21440 53.867 5.00e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g03702 Myb_DNA-binding 6.7e-15 CL0123