Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03697 ATGGGTGAAGAAGATTTAATCGGAGATTCTCAATTGGCGGGTGTACCCACCGGAGCTTGTCGTCTCCGGCGTGCTGTGGAACTCATTTGTTCGTTGCTATCTCTTTCTCTGTCGATTAGGGTCTTCGCCGGAAAATGGCAACTCATTCGTAACAAGCTTGAAGAGCTTCATTCTGGTTTAATCGCCGCTGAGAATTGTGATTCCGGTGATAATCCGTCGCTTTCTAGGTTGGTTACTTCGATAGTAGCGACGGTTAATGAGTGTCACGATCTGGGTCAGCGTTGTGTCGATGTTTCGTATAGTGGGAAGCTTTTGATGCAGAGTGATTTGGATGTAGCGTTTGCGAAACTTGATGGTTTAGCGAAGAAGCTTTCGGAGATATACAAAACGGGTCTTTTAACAAATGGGTTTGCGCTTGTTGTTTCAAAACCGTGTCTTGGTGCTTGTAAAGAGGATATGAGGTTTTATGTCAGAGACCTTTTGACAAGGATGAAGATTGGTGATTTGGGTATGAAGAAACAAGCTTTAAGGAATCTTCTTGAGGTTGTTGTTGAGGATGAGAAGTATGTGAAGGTGATTGTTGTTGATGTGAGTGATGTTGTTCATGTACTTGTTGGGTTTTTGGGTTCTGCTGAGGTTGAAATTCAAGAGGAGAGTGCTAAGGTTGTTTCTGTTGTTGCTGGTTTTGATTCATATAAAGGGGTTTTGATTAGTGCTGGTGTTATCGCGCCTTTGATTCGTGTTTTGGATTGTGGGAATGAGTTGGGGAAAGTTGCGTCTGCGAGGTGTTTGATGAAATTGACTGAGAATTCGGATAATGCTTGGGCTGTTTCTGCTCATGGTGGTGTTACTGCTTTGTTGAATATTTGTGGGAATGATGATTGTAAAGGTGATTTGGTTGGTTTTGCTTGTGGGGTGTTGAGAAATCTTGTTGGTGTTGAGGAAGTTAAGAGGTTTATGGTTGAGGAGGATGCCGTGTCTACGTTTATCAGGCTTGTGAAATCAAAGGAGGAAGCAATTCAGGTGAATTCAATAGGGTTCATTCAGAATATTGCTTTTGGAGATGAGGTGATTAGACAAATGGTGATTAGAGAAGGCGGACTCCGTGCTTTGTTACGCGTTTTGGATCCTAAATGGTCCTATTCTTCGAAAACAAAGGAAATAGCAATGAGGGCTATTGAGAGTTTGTGTTTTACTTCATCTAGTTCTATAAGTATTTTAATGAGTTATGGTTTTGTGGATCAATTATTATATTATGTTCGAAACGGTGAAGTTTCAATTCAAGAGTTGGCATTGAAAGTGGCATTTAGATTATCTGGAACATCTGAAGAGGCGAAGAAAGCAATGGGTGATTCTGGTTTTATGGCAGAATTTGTTAAGTTTCTGAATGCAAAATCATTCGAAGTACGCGAAATGGCAGCCGAGGCACTCTCTGGCATGGTCACGGTTCCTAAAAACCGGAAGAGATTTGTGCAAGATGACAATAACATAGCCCTACTTCTTCAATTGCTTGATCCAGAAGAAGAAAATTCAGAACAATGA 1542 0.4125 MGEEDLIGDSQLAGVPTGACRLRRAVELICSLLSLSLSIRVFAGKWQLIRNKLEELHSGLIAAENCDSGDNPSLSRLVTSIVATVNECHDLGQRCVDVSYSGKLLMQSDLDVAFAKLDGLAKKLSEIYKTGLLTNGFALVVSKPCLGACKEDMRFYVRDLLTRMKIGDLGMKKQALRNLLEVVVEDEKYVKVIVVDVSDVVHVLVGFLGSAEVEIQEESAKVVSVVAGFDSYKGVLISAGVIAPLIRVLDCGNELGKVASARCLMKLTENSDNAWAVSAHGGVTALLNICGNDDCKGDLVGFACGVLRNLVGVEEVKRFMVEEDAVSTFIRLVKSKEEAIQVNSIGFIQNIAFGDEVIRQMVIREGGLRALLRVLDPKWSYSSKTKEIAMRAIESLCFTSSSSISILMSYGFVDQLLYYVRNGEVSIQELALKVAFRLSGTSEEAKKAMGDSGFMAEFVKFLNAKSFEVREMAAEALSGMVTVPKNRKRFVQDDNNIALLLQLLDPEEENSEQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03697 513 Gene3D - 156 512 IPR011989 -
Trre8g03697 513 SMART arm_5 229 269 IPR000225 GO:0005515
Trre8g03697 513 SMART arm_5 313 353 IPR000225 GO:0005515
Trre8g03697 513 SMART arm_5 270 312 IPR000225 GO:0005515
Trre8g03697 513 SMART arm_5 442 482 IPR000225 GO:0005515
Trre8g03697 513 SMART arm_5 186 228 IPR000225 GO:0005515
Trre8g03697 513 SMART arm_5 354 398 IPR000225 GO:0005515
Trre8g03697 513 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 281 325 IPR000225 GO:0005515
Trre8g03697 513 SUPERFAMILY ARM repeat 158 510 IPR016024 -
Trre8g03697 513 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03697 Trre-Chr8 42020933 42025841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03697 204 434 U-box Gene Family AT3G54790 25.322 7.22e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03697 - - psat:127100726 860.522