Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03657 ATGAACGACTTGTTTTCGAATTCCTTCAAAAAATACACTGATTTGAAGGAACAAGCCCACATTGATGATGTCGAGGCAGGGAATAAAGAAAGTGTTAATCTCGATAAATTCTTTGAAGATGTCGAGAATATAAAAGAAGGCATGAAAACAATTGAAATATTGTTTAAGAAATTGCAAGAGGCTAATGAAGAAAGTAAAACCGTGCACAATGCTAAAACAATGAAAGAGCTTCGATCGCGAATGGACAAAGATGTTGAACAAGTCCTTAAACGTGTCAAAATAATTAAAGGAAAACTCGAAGCATTGGATCGTTCCAATGCGGCCAATAGAAACATTCCAGGGTGTGGTCCAGGTTCATCAGCGGATAGAACTAGAACTTCGGTTGTTAGTGGTTTAGGGAAGAAACTCAAAGATATGATGGATAGTTTTCAAGGGTTGAGAGCAAAAATGCACCACGAGTATAAGGAAACGGTGGAACGTAGATATTTTACAATAACGGGGGAGAAGGCGGATGAAGAAACTATAGATAATTTGATATCAAGTGGAGAAAGTGAAAATTTCATGCAAAAGGCAATTCAAGAACAGGGTAGGGGTCAAATAATGGATACTATTTCGGAAATTCAAGAAAGACATGATTCTGTTAAGGAAATAGAGAAAAATTTGATTGAGTTGCATCAAGTGTTTTTGGACATGGCAGCTTTGGTAGAGTCTCAAGGGCAACATCTTAATAACATAGAGAGCCATGTTGCACATGCTAGTTCTTTTGTAAGAAGAGGCACAGAACAACTTGTGGAAGCTAGAGAGCAACAAAAGAATTCTAGGAAGTGGACATGTTATGCCATACTTCTTGGTATTGTTCTTATTATTGTGCTCTTGTTTCCTCTCTTGATGTCACTTTTACCTCATTTGTTAAGAAGAAAATGA 924 0.3701 MNDLFSNSFKKYTDLKEQAHIDDVEAGNKESVNLDKFFEDVENIKEGMKTIEILFKKLQEANEESKTVHNAKTMKELRSRMDKDVEQVLKRVKIIKGKLEALDRSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDSFQGLRAKMHHEYKETVERRYFTITGEKADEETIDNLISSGESENFMQKAIQEQGRGQIMDTISEIQERHDSVKEIEKNLIELHQVFLDMAALVESQGQHLNNIESHVAHASSFVRRGTEQLVEAREQQKNSRKWTCYAILLGIVLIIVLLFPLLMSLLPHLLRRK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03657 307 SMART tSNARE_6 199 266 IPR000727 -
Trre8g03657 307 CDD SNARE_syntaxin1-like 203 265 - -
Trre8g03657 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Trre8g03657 307 Gene3D - 34 161 - -
Trre8g03657 307 Pfam Syntaxin 36 239 IPR006011 GO:0016020
Trre8g03657 307 SMART SynN_4 29 155 IPR006011 GO:0016020
Trre8g03657 307 FunFam Syntaxin 132 197 297 - -
Trre8g03657 307 Coils Coil 44 64 - -
Trre8g03657 307 Pfam SNARE domain 242 292 IPR000727 -
Trre8g03657 307 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
Trre8g03657 307 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Trre8g03657 307 CDD SynN 34 191 IPR006011 GO:0016020
Trre8g03657 307 PANTHER SYNTAXIN 43 290 IPR045242 -
Trre8g03657 307 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Trre8g03657 307 Gene3D - 192 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03657 Trre-Chr8 41291939 41292862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03657 1 304 SNARE and Associated Proteins AT1G61290 77.632 1.02e-178 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03657 K08486 - gmx:100818999 486.493