Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03633 ATGGACAATCTAATATTAAAGTTGAAGAGTTTATACACTTTAGTTATTTTACTTTTTGTACTATGTTTTAAGCTTTCTGTTTCTTCTAGATCACATAAGCACTATTATGGTGGTGGAAGAAAATTGAGAAGCTCTAGTGATAATGGTAGTGATCTTGTGACTAATTTACCTGGTCAGCCTCATGTAGATTTTAAGCACTATGCTGGTTATGTCACTGTCAATGAAACTAATGGAAGAGCACTCTTTTATTGGTTCTATGAGGCTATGACTAAGCCAGAAGAGAAACCATTGGTGTTATGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTAGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTAGATAATAATAATGATGGACAAGGCCTTAAATTTAATAACTTCTCATGGAACAAAGAAGCCAGCATGTTATTCCTAGAATCTCCTGTCGGAGTTGGCTTTTCATACTCAAATACAACCAGTGATTATAAACAATTGGGTGATGATTTAACAGCTAATGATGCTTACAATTTTCTACACAATTGGTTCCTCAAGTTTCCATCATATAGAACTAAGACATTTTACATAGCAGGGGAGAGTTATGCAGGAAAGTATGTACCAGAACTTGCTGAACTTATCCATGATAGGAACAAGGACCCATCTCTTTACATTGATCTCAAGGGTATTTTGCTAGGTAACCCTGAAACATCTGATGCTGAGGATTGGATGGGACTAGTTGATTATGCTTGGAGCCATGCTGTGATATCTGATGAAACTCACAAAACAATTAAAACAAGTTGTGATTTTAATAGTAGTGATCCATGGAAAAATGAAGATTGTGATCAAGCTGTTGATGAAGTACTTAAGCAGTATCATGAAATTGATATCTATAGTCTTTATACTTCTGTCTGTTTTGCCTCTACAGCACGTTCAAATGGTCAAACAATGCAAACTTCCACCAAACGTTCATCTAAAAGTTCATCCAAAATGATGCCTAGAATGATGGGTGGTTATGACCCATGCTTGGATGATTATGCTACAGCTTTTTATAATAGACCAGATGTTCAGAAGTCCCTTCATGCTAGTGATGGTCACAATCTAAAGAATTGGACTATTTGCAACAACAAGATATTTAATGATTGGGCAGATTCAAAACCATCAGTTATACCAATTTACAAGAAACTTATTTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTGCCAGTTCTTTCAACTAGGTACAGCTTAAGTACTCTAGCTTTGCCTGTCACTAAACCATGGAGGCCTTGGTACCATGAAAATGAGGTTAGCGGGTGGTATGAAGAATACGAAGGGCTTACATTTGCAACATTTAGAGGAGCCGGTCATGCAGTTCCCTGTTTTAAACCAGGCAACTCACTTGCATTTTTCACATCCTTTCTACGTGGAGACTCACCTCCTTCTACAAAATAA 1476 0.3747 MDNLILKLKSLYTLVILLFVLCFKLSVSSRSHKHYYGGGRKLRSSSDNGSDLVTNLPGQPHVDFKHYAGYVTVNETNGRALFYWFYEAMTKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDNNNDGQGLKFNNFSWNKEASMLFLESPVGVGFSYSNTTSDYKQLGDDLTANDAYNFLHNWFLKFPSYRTKTFYIAGESYAGKYVPELAELIHDRNKDPSLYIDLKGILLGNPETSDAEDWMGLVDYAWSHAVISDETHKTIKTSCDFNSSDPWKNEDCDQAVDEVLKQYHEIDIYSLYTSVCFASTARSNGQTMQTSTKRSSKSSSKMMPRMMGGYDPCLDDYATAFYNRPDVQKSLHASDGHNLKNWTICNNKIFNDWADSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSTLALPVTKPWRPWYHENEVSGWYEEYEGLTFATFRGAGHAVPCFKPGNSLAFFTSFLRGDSPPSTK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03633 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 184 209 IPR001563 GO:0004185|GO:0006508
Trre8g03633 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 148 158 IPR001563 GO:0004185|GO:0006508
Trre8g03633 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 454 467 IPR001563 GO:0004185|GO:0006508
Trre8g03633 491 PRINTS Carboxypeptidase C serine protease (S10) family signature 135 147 IPR001563 GO:0004185|GO:0006508
Trre8g03633 491 Gene3D - 343 379 - -
Trre8g03633 491 FunFam Carboxypeptidase 390 484 - -
Trre8g03633 491 FunFam Carboxypeptidase 47 308 - -
Trre8g03633 491 Gene3D - 390 484 - -
Trre8g03633 491 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 52 471 IPR001563 GO:0004185|GO:0006508
Trre8g03633 491 Gene3D alpha/beta hydrolase 48 308 IPR029058 -
Trre8g03633 491 SUPERFAMILY alpha/beta-Hydrolases 48 485 IPR029058 -
Trre8g03633 491 ProSitePatterns Serine carboxypeptidases, serine active site. 198 205 IPR018202 GO:0004185
Trre8g03633 491 FunFam Carboxypeptidase 340 486 - -
Trre8g03633 491 Pfam Serine carboxypeptidase 58 484 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03633 Trre-Chr8 40889519 40894413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03633 348 485 Calmodulin-binding Proteins AT2G22960 32.374 2.16e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03633 K16297 - gmx:100793427 873.233