Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03596 ATGAGTTGTGGCTGCTTTAGAGCCTCAACTCTCAAGAAAAAAAGGAGTCAATCTCATACTCCTCATGAAATTGATGGGTTTCCACTTGAAAATATTGTGCATTTTTCTGAAAAGGACTTGAGATTGGCCACTGATAATTATCATCCAAGCAAAAAGATAGGACGGGGAGGTTTTGGCACAGTTTACCAGGGAACCTTAAAAGATGGAAAACAAGTAGCAGTGAAGAGCCTTTCAGCTGCATCAAAGCAGGGAGTTCGTGAATTTTTAACGGAAATTAAAACTATATCGCTTGTCAAGCATCCAAACCTTGTTGAATTGATTGGTTGCTGCGTACAAGAACCTAATCGCACATTAGTTTATGAATATGTGGAAAATAACAACCTTGATCGTGCATTACTAGGAAATAGAAGCACAAACATTAAACTAGATTGGGAAAAAAGATCTAATATCTGCACAGGTACGGCTAGAGGTCTTGCGTTTCTTCATGAAGAAGCTGTTCCACACATTGTGCACAGAGACATCAAAGCTAGCAACATATTACTTGACAGAGACTTTAATCCAAAAATAGGAGATTTTGGCCTGGCTAAGTTATTTCCAGATGACATCACTCATATTAGCACAAGAATTGCTGGAACAACCGGTTACTTAGCACCCGAGTATGCAATGGGCGGCCAGTTAACCATGAAGGCTGATGTATATAGTTTTGGAGTTCTTATACTAGAAGTAATTAGTGGCCAAAGCAGTGCGAGGACAAACTGGGGAGGGTCAAACAAATTCCTCTTGGAATGGGCTTGGCAACTTCATGAAGAGGGGAAACTTTTGGAGCTTGTGGATCCAGAAATGGTTGAATATCCTAAGGAAGAGGTGACTAGGTACATGAAAGTAGCTTTTTTCTGCACACAAGCAGCAGCAAGTAGAAGGCCATCGATGTCGCAGGTTGTTGATATGCTATCCAAGAAAATTAGACTGAATGAAAAGCAACTAACAGCACCAGGGTTCTTCCAAACTTCAGGAGAATCCTCTCTAAAGAAGTCATCCATTGAGTCCACAAGCTATCAGTTTAGCTCTGCCCCTGCCAGTTTTACTCAGATCAGTCCGCGGTGA 1104 0.4121 MSCGCFRASTLKKKRSQSHTPHEIDGFPLENIVHFSEKDLRLATDNYHPSKKIGRGGFGTVYQGTLKDGKQVAVKSLSAASKQGVREFLTEIKTISLVKHPNLVELIGCCVQEPNRTLVYEYVENNNLDRALLGNRSTNIKLDWEKRSNICTGTARGLAFLHEEAVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEVISGQSSARTNWGGSNKFLLEWAWQLHEEGKLLELVDPEMVEYPKEEVTRYMKVAFFCTQAAASRRPSMSQVVDMLSKKIRLNEKQLTAPGFFQTSGESSLKKSSIESTSYQFSSAPASFTQISPR 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03596 367 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 349 - -
Trre8g03596 367 CDD STKc_IRAK 53 319 - -
Trre8g03596 367 SUPERFAMILY Protein kinase-like (PK-like) 31 351 IPR011009 -
Trre8g03596 367 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Trre8g03596 367 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Trre8g03596 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Trre8g03596 367 Gene3D Phosphorylase Kinase; domain 1 6 122 - -
Trre8g03596 367 PIRSF ILK 6 330 - -
Trre8g03596 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03596 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Trre8g03596 367 FunFam cold-responsive protein kinase 1 17 122 - -
Trre8g03596 367 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Trre8g03596 367 ProSiteProfiles Protein kinase domain profile. 47 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03596 Trre-Chr8 40478883 40483231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03596 12 333 Receptor kinase-like Gene Family AT1G07650 53.988 2.29e-109 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre8g03596 PK_Tyr_Ser-Thr 5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03596 - - tpra:123914434 693.345