Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03590 ATGTACGTGGCTTCCATGCGCAAGTCTTTCAAGGATTCCTTAAAACTCCTTGAAGCTGATATCCAACACGCCAATACTCTGGCGTCGGATTTTCCTAGGGAGTATGATGGTGCATCCGTTCAGATGAGAATGTCATACAGTCCAGCTGCACACTTGTTTCTGTTTTTTGTTCAATGGACAGATTGTCATCTTGCTGGAGCTCTTGGATTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGAACTACCACCATGTCTACCCATGAAAGAAAAGCAAGTATAAGGGAGTTCTATGCTGTCATTTATCCTTCTTTATTGCAACTTGAGAAAGGTGTCACTGATTCTGAGGATAGAAAGCAAAAGGCTGTATGCATGGAGAGGTATCGTAGAAGAGATGATGACGACTATAGGCAGTCTTCTGATATAGACATTGAAAGAGAAGATGAATGTGGGATATGCATGGAGATGAATAGTAAAATTGTGTTGCCCAACTGTAATCATGCTATGTGCCTGAAATGCTACCGAGAATGGCGAACAAGATCACAGTCATGCCCATTTTGCCGTGACAGTCTGAAGAGAGTTAACTCAGGGGATCTCTGGGTATATACTGATAGAAGGGATGTGGTTGATATGGCAACAGTGACAAGGGAGAATCTCAGACGGCTTTTCATGTACATAGATAAGTTGCCTTTGATTGTTCCAGACTCTCTCTTTGACACTTATGACTCTCACATAAGAGTTTCAGTTCTTGCTTCCCACTTCTACCATAAGTATCCAGCCCTTGTTATTGTGGGTTGGTGGTGA 807 0.4213 MYVASMRKSFKDSLKLLEADIQHANTLASDFPREYDGASVQMRMSYSPAAHLFLFFVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLEKGVTDSEDRKQKAVCMERYRRRDDDDYRQSSDIDIEREDECGICMEMNSKIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSGDLWVYTDRRDVVDMATVTRENLRRLFMYIDKLPLIVPDSLFDTYDSHIRVSVLASHFYHKYPALVIVGWW 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03590 268 FunFam RING/U-box superfamily protein 129 198 - -
Trre8g03590 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 197 IPR013083 -
Trre8g03590 268 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Trre8g03590 268 PANTHER RING FINGER PROTEIN 41, 151 8 246 - -
Trre8g03590 268 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Trre8g03590 268 SUPERFAMILY RING/U-box 141 194 - -
Trre8g03590 268 SMART ring_2 151 188 IPR001841 -
Trre8g03590 268 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03590 Trre-Chr8 40428968 40432362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03590 149 193 C3H Transcription Factor Family AT5G01960 40.000 5.88e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03590 K25840 - gmx:100777318 466.463