Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03583 ATGGCGGGACGATTCTTTGGATCTTCATCTGCTTCGATCTCCATGGTCGTCACAAACACGCCTTCCCAGGAACTCGCCCTAACCAATCTCGCCTTCATCTCCGCCTCCGATCTCCCCAAATTCGCCGTGCCCGGTCACGATAACCTATTCCTAGCTTCCATCGGCGATTCCTACGTTTTCTCTTTCTCATATCCTTCACAAACCTACTTTAATACAGCTCATGAAAGCATACGTGGTGGTCATATTGCATTGAATTCAATTCAACGTCGATGTGCAAAAGTTTCTTCTGGTGAATCCGTAGACGTGGCTCGATTCGTGCCGCCTGAAAACTTCAACCTGGCAGTGCTAACCCTTGAATTGGACTTCATTAAAAGAGCTGGAAGCAGAAATGAACAGATTGATGCTATTGTACTTGCCAAGCAACTTCGGAAGAGGTTTACAAAGCAGGTAATGACAACAGGGCAGAAAGTTTTATTCGAGCATCAAGGAATTAATTATAGCTTTACAGTCAGTCATGTTACTGTCGAGGGCCAAGAAAGGTCTAGTGATAGAGGGATGATTTCGGATGACACATTCATTGCTTTTGAAGCATCACGTGATAGTGGAATTAAGATTATCAATCAGCGTGATGGTACTACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTGAGTCTCTGGGTATTGGTGGTCTGGGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGTGTTTTCCCTCCCCATGTGACATCTAAATTAGGGATCAAGCATGTCAAGGGCATGCTGCTTTATGGTCCTCCTGGAACTGGAAAGACTCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGCAAGGAACCGAAGATTGTAAATGGCCCTGAAGTTTTAAGCAAATTTGTGGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAGGATCAGAGGAACCTAGGGGATGAAAGTGATTTGCATGTTATTATATTTGATGAAATTGATGCTATTTGTAAGTCCAGAGGCTCAACTCGAGATGGGACAGGGGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAATCACTAAACAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCACTCTTAAGACCAGGGCGGTTGGAAGTCCAGGTTGAGATAAGCCTCCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTAGCTCATGATGTGAACCTTCAAGAGCTTGCTGCTCGAACTAAAAACTACAGTGGTGCGGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGTCTAGAAGATCTCACTAAGCCAGTGGAGGAGGAAAATATTAAGGTTACGATGGAAGACTTTTTGAATGCACTCCATGAAGTTATTCCTGCATTTGGAGCTTCCACTGACGATCTTGAGCGATGCAGACTCCATGGCATGGTGGAGTGTGGTGGTCGACACCAGCACATTTATCAAAGAGCAATGACAATTGTTGAGCAAGTTAAAGTGAGTAAAGGAAGCCCTCTTGTTACTTGTCTTCTGGAAGGTTCTCGTGGCAGTGGTAAAACCGCACTTGCAGCTACTGTAGGTATTGATAGTGACTTCGCATATGTCAAGATAATTTCAGCTGAAACAATGATCGGTCTACATGAGAGCACTAAATGTGCCCAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCTTTGAGTGTCATTGTTCTTGATGACATTGAGAGATTATTGGAGCATGTGGCCATTGGTCCTCGTTTTTCAAACTTGATCTCTCAGACACTACTGGTCCTGCTCAAAAAGCTACCTCCGAAGGGGAAAAAACTCATGGTAATTGGTACAACAAGTGAGGTCGACTTTTTGGATTCAATTGGTTTTTGTGATACATTCTCCATAACTTACAATGTGCCCACCTTGAACAAAGAAGATGCAAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTGATGAAGATATTGATTCTGCCGCAGAGGCATTGGATAATATGCCTATCAAGAAGCTATACATGTTGATTGAGATGGCAGCGCAAGGTGCGCAAGGTGGATCTGCAGAAGCTGTCTATTCTGGCAAAGAGAAGATTAATATATCTCATTTCTACGATTGCCTTGGGGATGTTGTCAGATTAGTATAA 2262 0.4209 MAGRFFGSSSASISMVVTNTPSQELALTNLAFISASDLPKFAVPGHDNLFLASIGDSYVFSFSYPSQTYFNTAHESIRGGHIALNSIQRRCAKVSSGESVDVARFVPPENFNLAVLTLELDFIKRAGSRNEQIDAIVLAKQLRKRFTKQVMTTGQKVLFEHQGINYSFTVSHVTVEGQERSSDRGMISDDTFIAFEASRDSGIKIINQRDGTTSNIFKQKEFNLESLGIGGLGAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRNLGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAHDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMEDFLNALHEVIPAFGASTDDLERCRLHGMVECGGRHQHIYQRAMTIVEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFAYVKIISAETMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEHVAIGPRFSNLISQTLLVLLKKLPPKGKKLMVIGTTSEVDFLDSIGFCDTFSITYNVPTLNKEDAKKVLEQLNVFADEDIDSAAEALDNMPIKKLYMLIEMAAQGAQGGSAEAVYSGKEKINISHFYDCLGDVVRLV 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03583 753 Gene3D - 407 494 - -
Trre8g03583 753 PANTHER VESICULAR-FUSION PROTEIN NSF 13 751 IPR039812 GO:0016887|GO:0035494
Trre8g03583 753 SUPERFAMILY ADC-like 12 105 IPR009010 -
Trre8g03583 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 504 IPR027417 -
Trre8g03583 753 SUPERFAMILY Cdc48 domain 2-like 108 209 IPR029067 -
Trre8g03583 753 Gene3D - 216 406 IPR027417 -
Trre8g03583 753 FunFam Vesicular-fusion ATPase SEC18 217 407 - -
Trre8g03583 753 FunFam Vesicle-fusing ATPase 407 494 - -
Trre8g03583 753 Gene3D - 108 205 - -
Trre8g03583 753 SMART AAA_5 261 408 IPR003593 GO:0016887
Trre8g03583 753 SMART AAA_5 541 679 IPR003593 GO:0016887
Trre8g03583 753 FunFam vesicle-fusing ATPase isoform X1 503 674 - -
Trre8g03583 753 FunFam Vesicle-fusing ATPase 109 205 - -
Trre8g03583 753 FunFam Vesicle-fusing ATPase protein 12 105 - -
Trre8g03583 753 Pfam AAA+ lid domain 432 487 IPR041569 -
Trre8g03583 753 Pfam ATPase family associated with various cellular activities (AAA) 546 660 IPR003959 GO:0005524|GO:0016887
Trre8g03583 753 Pfam ATPase family associated with various cellular activities (AAA) 265 405 IPR003959 GO:0005524|GO:0016887
Trre8g03583 753 CDD RecA-like_NSF-SEC18_r1-like 228 404 - -
Trre8g03583 753 ProSitePatterns AAA-protein family signature. 376 394 IPR003960 GO:0005524|GO:0016887
Trre8g03583 753 Gene3D - 9 105 - -
Trre8g03583 753 Gene3D - 503 674 IPR027417 -
Trre8g03583 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 529 716 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03583 Trre-Chr8 40376813 40387179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03583 256 492 Calmodulin-binding Proteins AT3G56690 36.905 1.01e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03583 K06027 - gmx:100779259 1243.41