Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03578 ATGAATATGGTGGACCCTTCCTTTGGTCTAACAAGGATACCTCATAACTCCGCAGAAAAAAGAAAGGTACTTAGAGCATCTCCAGCGATAGTTGCTAACGGCCAGCGTGGAGGTTTTGGTTCCCTCTGTGAGAAGTTTCAGCGTTGGAGCAAAAAAACATGGCGTTCCCGTTGCTTAGTTTTACTTGATCATACACCAACTTACTCCCCCTGCTTATTCACTCTCTCCCTTTCTCTCGGGACTAAAGAAAGACTAACAATAATAGGTTGCAAGAAAGATTTCGCGCATGAACCAGTTGTAACACTATGTGGTCACCTTTACTGCTGGTCCTGCATCTATAAATGGCTCTTTGTGCAAAGTGCCTCTCTTGCACCTGATGAGCCCCCACAATGTCCAGTTTGTAAGGATGGTATATCTCACACCAAAATGGTCCCTCTTTATGGCAGGGGCCAGAGTACGTTATCACTCCGTGATCACGACTGCGACAGGAAAACTACCCTTCAAGATATTTCTATACCACCGAGACCATCTGCATCAGCGATTCAATCTCTATTGGCAATGGCAACATCACCTCAAAATCAAAGTGGTCAACAACTTCCATATCGTAATCCTTATCAGAATCAGCTTATTAACTCTCCTCCGTACCATGAGAATGATGATGAAACTTCACAAATGCTCAATCTTGGTAGCTTTATGACACCAATATTCCCTCACTATGTCTTTGGCAACTCAGGAAATTCAGATAGTTCTAGGTGGAGAAGGCAAGAGATGCTGGCAAACAAATCATTGAACAGAATATCATTTTTTCTGTTTTTATGCTTTGTCCTTTGTTTGATCCTCTTCTGA 846 0.4267 MNMVDPSFGLTRIPHNSAEKRKVLRASPAIVANGQRGGFGSLCEKFQRWSKKTWRSRCLVLLDHTPTYSPCLFTLSLSLGTKERLTIIGCKKDFAHEPVVTLCGHLYCWSCIYKWLFVQSASLAPDEPPQCPVCKDGISHTKMVPLYGRGQSTLSLRDHDCDRKTTLQDISIPPRPSASAIQSLLAMATSPQNQSGQQLPYRNPYQNQLINSPPYHENDDETSQMLNLGSFMTPIFPHYVFGNSGNSDSSRWRRQEMLANKSLNRISFFLFLCFVLCLILF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03578 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 93 279 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre8g03578 281 ProSitePatterns Zinc finger RING-type signature. 103 112 IPR017907 -
Trre8g03578 281 SMART ring_2 90 134 IPR001841 -
Trre8g03578 281 Pfam Zinc finger, C3HC4 type (RING finger) 90 134 IPR018957 GO:0046872
Trre8g03578 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 146 IPR013083 -
Trre8g03578 281 SUPERFAMILY RING/U-box 93 147 - -
Trre8g03578 281 ProSiteProfiles Zinc finger RING-type profile. 90 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03578 Trre-Chr8 40247159 40249668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03578 93 267 C3H Transcription Factor Family AT4G27470 36.082 2.92e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03578 K10666 - gmx:100779793 206.068