Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03576 ATGATGCAAAGCCAACAAGTCACCAATGAAGACGACGACGGCCCGCCACCCGGTTGGCAACCTATCCCCACTCCGCTACGCCCACCGCCAAAGCAACTTACATCCGGTTTTGCTCAAATGGTCTGTGGTTCTTGTCGCCGCCTGCTTTCATATCCACAAGGTGCCAAACATGTCAAATGTTCATGCTGTCAGACAGTCAACATTGTATTACAAGCTGATCAGGTTGGGCAAGTGAAGTGTGGGAGTTGTGCGGTATTGCTAATGTACCCATATGGCGCTTCACAAGTTAGATGTTCATCATGCCAGTTCGTGACAGAAATTGGGGCAAACAACAAGCGGCCTCCATGGTCTGAACAACAAAACAAACCAACTCCTCCCAAAACTGGTTGTTAG 393 0.4911 MMQSQQVTNEDDDGPPPGWQPIPTPLRPPPKQLTSGFAQMVCGSCRRLLSYPQGAKHVKCSCCQTVNIVLQADQVGQVKCGSCAVLLMYPYGASQVRCSSCQFVTEIGANNKRPPWSEQQNKPTPPKTGC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03576 130 MobiDBLite consensus disorder prediction 1 31 - -
Trre8g03576 130 MobiDBLite consensus disorder prediction 16 30 - -
Trre8g03576 130 MobiDBLite consensus disorder prediction 110 130 - -
Trre8g03576 130 PANTHER PROTEIN LSD1 13 126 IPR040319 -
Trre8g03576 130 Pfam LSD1 zinc finger 80 104 IPR005735 -
Trre8g03576 130 Pfam LSD1 zinc finger 42 66 IPR005735 -
Trre8g03576 130 NCBIfam zinc finger domain, LSD1 subclass 77 105 IPR005735 -
Trre8g03576 130 NCBIfam zinc finger domain, LSD1 subclass 39 69 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03576 Trre-Chr8 40229216 40231176 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Trre8g03576 zf-LSD1 8.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03576 - - psat:127106613 222.631