Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03559 ATGGAGAATCGTCCAGCATGTGCTGCTTGCAGACGCCAAAGAAAAAAATGCATGAGAGATTGCATTCTTGCTCCTTATTTTCCACTAAACAAGCTTCAAGAATATAAACAAGTTCTTAGAGTTTTTGGTTACAGCAACGTCACAAAAATGGTTCAAAACCTTGGTGAACAAGAAAGACAAAATGCCATCAATTCTATTAAATGGGAAGCTAAGATGTGGACTCAAGATCCAATCTCTGGTCCATTTGGGGCTTACAATGTTGCTTGTAAGACCATTACACATCTATGCAATCTCCTCCAACAACAACAACAAGAACAAGCCCATCAATGGAATCTCCTCCTCCAACAACAACAAGAACAAGCCCATCAAAGGGTTTCAACTTCTGAGCCCAACAAGTTTATGGGCCAGGCCCAAGTTTCATTACCTTTCAGTCATGAAGCTTTACCGGTTTCAAATAATGTCAATTGGGCATATTTTGATTCCCCTTATGTGGCTAGTAACAATGTTGTGCAAAATAATCTCAATTTTGAATATCCATATGTAAATTACTTTGGAGGTTCTTTGCAAAATGAGGAACAAAATGTATTGAAGTGTGTTCCTAGTAGTATTGTGCAACCTTCACAATCTAATTATTTGCAAAGTGTGGCAAGTAGTTCCGGCACTAATGTGGCAATGGATCAGCATTTTTATTATTGTGATGAGAATATCGTGACCAATGAAGAGATGGGAATGCAAAGAGATGGTCAAGGAAATTATGGTATTCACACAATGGCACAAAATAGAGTAAGGAGCCAAATTACAGAAATTCAGCATAGTTATTTTATTTATTAG 831 0.3742 MENRPACAACRRQRKKCMRDCILAPYFPLNKLQEYKQVLRVFGYSNVTKMVQNLGEQERQNAINSIKWEAKMWTQDPISGPFGAYNVACKTITHLCNLLQQQQQEQAHQWNLLLQQQQEQAHQRVSTSEPNKFMGQAQVSLPFSHEALPVSNNVNWAYFDSPYVASNNVVQNNLNFEYPYVNYFGGSLQNEEQNVLKCVPSSIVQPSQSNYLQSVASSSGTNVAMDQHFYYCDENIVTNEEMGMQRDGQGNYGIHTMAQNRVRSQITEIQHSYFIY 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03559 276 Coils Coil 100 120 - -
Trre8g03559 276 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 128 - -
Trre8g03559 276 Pfam Lateral organ boundaries (LOB) domain 6 100 IPR004883 -
Trre8g03559 276 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03559 Trre-Chr8 39829121 39829951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03559 6 102 AS2 family AT1G06280 43.299 5.84e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre8g03559 LOB 3.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03559 - - mtr:25493051 233.802