Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03553 ATGGATGAAAGTGGTAGTTCTTGGATAAGGAGGACAAAATTCTCTCACACAGTTTGTCACCGATTGGATTATTCGAGAACAGGCTCTTTCATTATTCAGCCTGATGCAGTGCTGAATTCAGGTCTGAAATCAAGGGCGGTATCATCAGCGTCGGCAACAGCAATAGCAGCATCAGCACCTCCTGTTGTTTCTAAGGTAACAAAGGTTCTGAAGCATCCTTTAACAAATAAGCTGAGATCTTTGTCTCCTTTGCCTAAGAGCTCTCTCTCTGAAATCTTTAAGGAAGCTAAGCATGAACAGAAGAGGTTCTCAACTCCAGGACCAAGGAGAAAGGAGGAGGATACAAGAATCATGGGGAAGCTACTAAACAAGGATTCTCAAGTGTCCAAGTCTAAATTTCCTCATAAAAGTCCAATTAAGCACCTCACATCGATGAAATTCAGTGACAAGTCGAAGAACCGCAAGGACTCGGGATGGACAAAGTATTTTGACCACAGTGCAGGAAAGGTTACTGCTGTCGAAACGGCCGAGGAATGGAATGTTGACCTATCTAAGCTCTTTGTTGGTCTTAGGTTTGCTTATGGGGCTAACAGCAGGCTTTACCATGGTATGTATGAGGATGCGCCTGTTGCTGTGAAAATTATTAGGGTACCCGATGATGACGAAAACGGAATGTTGGCTGCTAAATTAGAGAAACAATTCATCACAGAAGTCACACTTTTATCTCGTCTCCACCATCAAAATGTTCTTAAGTTTGTAGCAGCATGCAGAAATCCACCTGTTTATTGTGTTATCACAGAATATCTATCGGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGGGAAAACCTATTTCTCTACAAAAGCTAATTGCTTTTTCTCTTGATATTGCTCATGGAATGCAATATATACACTCTCAAGGTGTCATTCATCGAGACCTTAAACCAGAGAATGTTCTTATTAATGACACTCACCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCATACTGTGACTTACTTGCTGATGACCCTGGTACATACCGCTGGATGGCACCTGAGATGATCAAACGGAAATCCTATGGAAGAAAAGTTGATGTGTATAGTTTTGGCCTTATCTTGTGGGAAATGCTTACCGGTACAATACCATATCAGGACATGACTCCCATCCAGGCTGCTTTTGCTGTCGTAAATAAGAATTCAAGGCCTGTTATTCCTTCAAACTGCCCACCTGCTATGCGAGCTTTAATTGAGCAATGCTGGTCCTTGCATCCGGACAAAAGGCCTGAGTTTTGGCAGATTGTTAAGGTATTGGAGCAATTTGAATCTTCGCTTGCTCGTGATGGAACATTGACCCTGCAGCAAAACCCTTGTGGTCAAGATCATAAAAAGGGACTTCTTCATTGGATTCACAAGCTTGGTCCTGCACATCATAGTGGTCCTGTGCCTAAACCAAAATTTACATGA 1476 0.4221 MDESGSSWIRRTKFSHTVCHRLDYSRTGSFIIQPDAVLNSGLKSRAVSSASATAIAASAPPVVSKVTKVLKHPLTNKLRSLSPLPKSSLSEIFKEAKHEQKRFSTPGPRRKEEDTRIMGKLLNKDSQVSKSKFPHKSPIKHLTSMKFSDKSKNRKDSGWTKYFDHSAGKVTAVETAEEWNVDLSKLFVGLRFAYGANSRLYHGMYEDAPVAVKIIRVPDDDENGMLAAKLEKQFITEVTLLSRLHHQNVLKFVAACRNPPVYCVITEYLSEGSLRAYLHKLEGKPISLQKLIAFSLDIAHGMQYIHSQGVIHRDLKPENVLINDTHLKIADFGIACEEAYCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMLTGTIPYQDMTPIQAAFAVVNKNSRPVIPSNCPPAMRALIEQCWSLHPDKRPEFWQIVKVLEQFESSLARDGTLTLQQNPCGQDHKKGLLHWIHKLGPAHHSGPVPKPKFT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03553 491 Gene3D Transferase(Phosphotransferase) domain 1 271 468 - -
Trre8g03553 491 PRINTS Tyrosine kinase catalytic domain signature 304 322 IPR001245 GO:0004672|GO:0006468
Trre8g03553 491 PRINTS Tyrosine kinase catalytic domain signature 266 279 IPR001245 GO:0004672|GO:0006468
Trre8g03553 491 PRINTS Tyrosine kinase catalytic domain signature 412 434 IPR001245 GO:0004672|GO:0006468
Trre8g03553 491 PRINTS Tyrosine kinase catalytic domain signature 349 359 IPR001245 GO:0004672|GO:0006468
Trre8g03553 491 PRINTS Tyrosine kinase catalytic domain signature 368 390 IPR001245 GO:0004672|GO:0006468
Trre8g03553 491 FunFam serine/threonine-protein kinase HT1 271 462 - -
Trre8g03553 491 ProSiteProfiles Protein kinase domain profile. 186 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03553 491 Pfam Protein tyrosine and serine/threonine kinase 195 441 IPR001245 GO:0004672|GO:0006468
Trre8g03553 491 Gene3D Phosphorylase Kinase; domain 1 174 270 - -
Trre8g03553 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Trre8g03553 491 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 60 448 - -
Trre8g03553 491 SUPERFAMILY Protein kinase-like (PK-like) 167 441 IPR011009 -
Trre8g03553 491 SMART serkin_6 186 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03553 491 CDD STKc_MAP3K-like 195 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03553 Trre-Chr8 39767137 39769495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03553 1 491 MAP Kinase Kinase Kinase AT5G58950 56.629 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre8g03553 PK_Tyr_Ser-Thr 5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03553 - - psat:127105197 835.484