Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03539 ATGGAGCCCAATGAAATTGAAAACCTTTTTCGAAACCTTCTGTATGATTACCTCAAGAAGAGTGGATTGTCAAACACTGCTGAGAGTTTGCAAAATGAAGCTCAAATTACTGGACAAACTCCTCCCGAATTTAATCGATCTACGGACGGATTCTTGCACGACTTATGGATGTCATTCTATAACATGTACTATAAGTATATCTCTATGCAAGAGAGAACAAGATTATCCAGTCAGACTCAGGTCCCAAACATTGGTGCTATAATGGACAACATCCCTCAAATAACTCGGGAAGGGTATTTTATTCGAAACCTCGCACGTTTTCCAAGCCAAGAGACACTTTTGTCCTGCGATTTTTCATCAGATGGAAAATTTGTAGCAAGTGGCGGATTTGGGACAAAGGCTTTCGTTTGCAACCAGGAGTCTAGTGAATCTGGTTATACATCAGAGTCACATTCATCTGCCATCTTAGAAGTTAGATTTCAACCAGGATCAACTATATTTGCAACATCTTCTACTGATAAAACAGTAAAGTTATGGGATGCAAAAAGTCCTGAAAAAGCGGTATACGAATTTACATATAATGGAATAGTAAGATCATTGGACTTCCACCCAACAGAAAGAATTCTTTGCTCGTCCGATACCCGTGATGAACTTAAAGTGTGGAATCTCGTTCAGCATGTTAGGACAAACCATGCTATGGCAGATGTAAGCATAGTGAGATTTCAGCCTGGATCAGGGAGGCTTTTGGCAGTTGCCGTTCGAAATGTTATCAACATACTTGATTATAAGACTTTTATTGTTCTGAATTGTCTCCGGGGGCACGTCAAACATATTTGTTCCTTATGTTGGGATGTCACTGGGCAAACGATCGCCTCTGTCAGTGAAGATAGTGTGCGTGTCTGGTTGCTTTCTATGAACGGACAGTGCTTATACGAGTATCCATCAAATGGGAAGATATTTCAGTCCATCATATTTCATCCTAAATACCGTAACGTCTTAGTTGTTGGTGGTTTTCAGTGCATGGAATTGTTGATTCTTGAGTGCAATGGGAAAATTCGCAGTATTGATTGCTCTTTTACATCAATTACTGGACTTGCAGCTTGTATTCAAATGGAATTATTTGCATCAACTAGCAATGATTCTGTGCCTGTGGTGAACATATGGAAATGA 1170 0.3974 MEPNEIENLFRNLLYDYLKKSGLSNTAESLQNEAQITGQTPPEFNRSTDGFLHDLWMSFYNMYYKYISMQERTRLSSQTQVPNIGAIMDNIPQITREGYFIRNLARFPSQETLLSCDFSSDGKFVASGGFGTKAFVCNQESSESGYTSESHSSAILEVRFQPGSTIFATSSTDKTVKLWDAKSPEKAVYEFTYNGIVRSLDFHPTERILCSSDTRDELKVWNLVQHVRTNHAMADVSIVRFQPGSGRLLAVAVRNVINILDYKTFIVLNCLRGHVKHICSLCWDVTGQTIASVSEDSVRVWLLSMNGQCLYEYPSNGKIFQSIIFHPKYRNVLVVGGFQCMELLILECNGKIRSIDCSFTSITGLAACIQMELFASTSNDSVPVVNIWK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03539 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 189 IPR001680 GO:0005515
Trre8g03539 389 SUPERFAMILY WD40 repeat-like 112 388 IPR036322 GO:0005515
Trre8g03539 389 SMART WD40_4 348 389 IPR001680 GO:0005515
Trre8g03539 389 SMART WD40_4 264 302 IPR001680 GO:0005515
Trre8g03539 389 SMART WD40_4 306 347 IPR001680 GO:0005515
Trre8g03539 389 SMART WD40_4 141 180 IPR001680 GO:0005515
Trre8g03539 389 SMART WD40_4 184 222 IPR001680 GO:0005515
Trre8g03539 389 SMART WD40_4 100 138 IPR001680 GO:0005515
Trre8g03539 389 Pfam WD domain, G-beta repeat 269 301 IPR001680 GO:0005515
Trre8g03539 389 Pfam WD domain, G-beta repeat 149 180 IPR001680 GO:0005515
Trre8g03539 389 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 7 68 IPR044716 GO:0003714
Trre8g03539 389 Pfam LisH 15 34 IPR006594 GO:0005515
Trre8g03539 389 Gene3D - 230 389 IPR015943 GO:0005515
Trre8g03539 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 183 - -
Trre8g03539 389 ProSiteProfiles LIS1 homology (LisH) motif profile. 13 38 IPR006594 GO:0005515
Trre8g03539 389 Gene3D - 95 229 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03539 Trre-Chr8 39540203 39542438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03539 78 303 U-box Gene Family AT2G33340 23.750 6.40e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03539 - - tpra:123919071 514.998