Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03530 ATGGCTGCTTCACCTTCTTCAGCTCTCAATTCCCTCTCTTCTCTCTCTTTCCGTTCTTCTTCTTCTTCTTCTTGTTTCTCTCTCCTCCCCACTACCAACAAACTCACATTCCCTCTCCTCACTAAAAGTAAAACAACCCCACTCTCATTCTCCTCTTTCATCGTCAAATCCACCATCTCTGAAGAAGACCTTCCATTCAACCCACCCGAAATCCCCGAAGATTTCATCGACCCACCTTCCATCTACGACGAACCAGAAGAAAACGAAGACGAAATTGCCGCCGCTTTTGAAGAGCTTTACGGTGTCGGCTACAGTGGAGTTAGTGTGTTGGGAAATGACGTATTTGAGATGGATTCAAAGTCGAAGAAGAAGGATACTGGAATTGGTGGTGCGAGGAAGAAACAGAAAGGGAAAATAAGAGATGGGTTTGAAGAAAGAGTTGTTCAAGTTAGAAGGGTTACTAAGGTTGTTAAAGGTGGGAAACAAATGAGGTTTAGAGCTATTGTTGTTGTTGGTGATAAGAATGGACAAGTTGGTGTTGGTGTTGGTAAGGCTAAAGAAGTTATTTCTGCTGTTCAGAAATCTGCTATTGATGCTAGAAGGAATCTTATTAGAGTTCCCATGACTAAGTACTTGACTTTTCCTCATAGAGCTGACGGAGATTTTGGAGCAGCAAAGGTGATGCTTAGACCCGCTTCTCCTGGTACCGGTGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTTGAATTGGCAGGTGTTGAAAATGCTTTGGGGAAACAAATAGGAAGTGACAATGCACTCAACAATGCCAGAGCAACTGTTGCTGCAGTGCTGAAAATGAAGCAGTACAGTGAGGTCGCCGAAGAGCGTGGAATCCCTATGGAAGAGTTATGGAAGTAA 900 0.4378 MAASPSSALNSLSSLSFRSSSSSSCFSLLPTTNKLTFPLLTKSKTTPLSFSSFIVKSTISEEDLPFNPPEIPEDFIDPPSIYDEPEENEDEIAAAFEELYGVGYSGVSVLGNDVFEMDSKSKKKDTGIGGARKKQKGKIRDGFEERVVQVRRVTKVVKGGKQMRFRAIVVVGDKNGQVGVGVGKAKEVISAVQKSAIDARRNLIRVPMTKYLTFPHRADGDFGAAKVMLRPASPGTGVIAGGSVRIVLELAGVENALGKQIGSDNALNNARATVAAVLKMKQYSEVAEERGIPMEELWK 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03530 299 Hamap 30S ribosomal protein S5 [rpsE]. 117 296 IPR005712 GO:0003735|GO:0006412|GO:0015935
Trre8g03530 299 NCBIfam 30S ribosomal protein S5 142 296 IPR005712 GO:0003735|GO:0006412|GO:0015935
Trre8g03530 299 Pfam Ribosomal protein S5, N-terminal domain 143 207 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre8g03530 299 ProSiteProfiles S5 double stranded RNA-binding domain profile. 143 206 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre8g03530 299 FunFam 30S ribosomal protein S5 208 299 - -
Trre8g03530 299 Gene3D - 210 298 IPR014721 -
Trre8g03530 299 FunFam 30S ribosomal protein S5 132 204 - -
Trre8g03530 299 SUPERFAMILY Ribosomal protein S5 domain 2-like 213 291 IPR020568 -
Trre8g03530 299 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 123 294 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre8g03530 299 Gene3D - 140 204 - -
Trre8g03530 299 ProSitePatterns Ribosomal protein S5 signature. 160 192 IPR018192 -
Trre8g03530 299 Pfam Ribosomal protein S5, C-terminal domain 220 290 IPR005324 GO:0003735|GO:0005840|GO:0006412
Trre8g03530 299 SUPERFAMILY dsRNA-binding domain-like 140 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03530 Trre-Chr8 39457007 39459532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03530 143 299 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 30.303 3.07e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03530 K02988 - gmx:100787105 353.599