Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03529 ATGGAAAATTTGTTTTCGCAGTATTCCACCAACCCTTCATCATCCACCACTAGCACTCCCATCTCCCCTTCTTTCTCATCCTTAAATGTAATCATTTCACAACAAAATGCGGATCCTTTCCAGATTAATAATGTTCACCTCTCTAATAATAGTGGATATCCATTTTCCTTTCCTTCAAGTCCATTTCCCACACCTAATCACGTGCATACATATTGCTCAACGAATCAGCTTCATCAAGGTGATTTCATTCCAACGGGACAGAGTCATGTTTCCTTGATAAGTCCAACTACCTTTCAAATTCAAGCACAAATGGAAGATGATAGGAAGAAGATTGAAGCTACGAGGGGGAAAATTGCCAGGGAACAAAGGAAACAAATAGTACAAAAACATAGAATTGCTGCTGCTACTAAGGCCTCAGAAGACAGAACAAGGAGACAACGTATTTACCAAGAGATCCAAGATAGAACTCCACATATTTTTTTCACTCCAGATGGGAAGCGATTTGAAGAAATCCTGACAAAGAAGTTGAGCGCCAGCGATGTTAACAAAGTTGGCCGCATTGTCCTCCCAAAGAGGGAGGCTGAGAAAATACTTCCAACGCCTACTAGAGAAGGGATAACAATTGTTTTCAAGGATATATGTTCTGCACTTGAATGGAAAGTGAAATTCAGGTACTGGATTAATACTAAAAGTAGAATGTATGTTCTCGAAAATACAGGAGATCTAGAGGATCATTACAAACTACATATCGGAGATCATTTAAGCCTTTATGAGGACAGATCTAAAATCATGTATGTGTACATAAAGAAGGCTTGTGATCTACCGACACTTGAGCTATTTCCTTATAGAGACCAAGGTAAGGAAACAGAACCGGTAGAATCAATCAACCAACAACTATCATCAAATAGTATGGAATTGCAAGCACCAAACCAATTAGCTGGTCAAAGTACCAACAAAATTACGACATCTTGTGTCTTGGAGAAAACCATTTCGATGGATGGTGATAATGACGATGATGATGATGATGGTGGTGTTTGTGGTGGTGGTGAGCAGCAATACAATTTGGACAAATTCTATAAGAGTCTTGACAATATTTGTGATATTTACTAG 1110 0.3874 MENLFSQYSTNPSSSTTSTPISPSFSSLNVIISQQNADPFQINNVHLSNNSGYPFSFPSSPFPTPNHVHTYCSTNQLHQGDFIPTGQSHVSLISPTTFQIQAQMEDDRKKIEATRGKIAREQRKQIVQKHRIAAATKASEDRTRRQRIYQEIQDRTPHIFFTPDGKRFEEILTKKLSASDVNKVGRIVLPKREAEKILPTPTREGITIVFKDICSALEWKVKFRYWINTKSRMYVLENTGDLEDHYKLHIGDHLSLYEDRSKIMYVYIKKACDLPTLELFPYRDQGKETEPVESINQQLSSNSMELQAPNQLAGQSTNKITTSCVLEKTISMDGDNDDDDDDGGVCGGGEQQYNLDKFYKSLDNICDIY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03529 369 MobiDBLite consensus disorder prediction 1 21 - -
Trre8g03529 369 SUPERFAMILY DNA-binding pseudobarrel domain 171 268 IPR015300 -
Trre8g03529 369 Pfam B3 DNA binding domain 173 267 IPR003340 GO:0003677
Trre8g03529 369 SMART B3_2 172 272 IPR003340 GO:0003677
Trre8g03529 369 Coils Coil 104 124 - -
Trre8g03529 369 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 97 271 IPR044800 GO:0003700
Trre8g03529 369 CDD B3_DNA 171 270 IPR003340 GO:0003677
Trre8g03529 369 Gene3D - 161 275 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03529 Trre-Chr8 39431140 39433724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03529 162 265 B3 DNA Binding Superfamily AT1G28300 47.619 2.69e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre8g03529 B3 1.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03529 K09287 - psat:127102899 274.633