Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03528 ATGAAGTTTAACGTTGCGAATCCAACAACTGGATGCCAGAAGAAGCTTGAAATCGATGATGACCAGAAGCTTCGTGCTTTTTGGGACAAGAGGATCTCACAGGAAGTCCTTGGTGATGCTTTGGGCGAGGAATTTAAGGGCTATGTTTTCAAAATCACTGGTGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTGACACCTGGTCGTGTTCGCCTCTTGCTCCATCGAGGAACTCCTTGTTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGAAGAAAGTCTGTTCGTGGATGCATTGTCAGCCCCGACCTCTCTGTCTTGAACTTGGTAATTGTGAAGAAAGGTGACAATGATTTGCCAGGTCTTACTGATGTTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGAAAGCTGTTCAACCTGTCAAAGGAGGATGATGTGCGAAAATATGTTAACACCTACCGTCGAACCTTTACCACCAAGGCCGGGAAAAAGGTTAGCAAAGCCCCAAAGATTCAACGTCTGGTCACTCCTTTGACACTCCAAAGGAAGCGTGCAAGAATTGCAGACAAGAAGAAGAGAATCGCCAAGGCAAAATCAGAGGCAGCAGAATATCAGAAACTCCTTGCATCCAGATTGAAGGAGCAGAGGGAACGCCGAAGTGAGAGCTTGGCAAAGAAGAGGTCTAGACTATCCACTGCTACAAAGCCAGTCACAGCTTAG 747 0.4699 MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRLSTATKPVTA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03528 248 Coils Coil 189 216 - -
Trre8g03528 248 Gene3D - 133 234 - -
Trre8g03528 248 PIRSF RPS6e 1 247 IPR014401 GO:0003735|GO:0005840|GO:0006412
Trre8g03528 248 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Trre8g03528 248 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Trre8g03528 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 239 IPR001377 GO:0003735|GO:0005840|GO:0006412
Trre8g03528 248 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Trre8g03528 248 MobiDBLite consensus disorder prediction 220 237 - -
Trre8g03528 248 MobiDBLite consensus disorder prediction 220 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03528 Trre-Chr8 39426125 39428197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03528 1 248 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.494 3.49e-121 341