LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g03528	ATGAAGTTTAACGTTGCGAATCCAACAACTGGATGCCAGAAGAAGCTTGAAATCGATGATGACCAGAAGCTTCGTGCTTTTTGGGACAAGAGGATCTCACAGGAAGTCCTTGGTGATGCTTTGGGCGAGGAATTTAAGGGCTATGTTTTCAAAATCACTGGTGGATGTGACAAGCAAGGTTTCCCAATGAAGCAGGGAGTGTTGACACCTGGTCGTGTTCGCCTCTTGCTCCATCGAGGAACTCCTTGTTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGAAGAAAGTCTGTTCGTGGATGCATTGTCAGCCCCGACCTCTCTGTCTTGAACTTGGTAATTGTGAAGAAAGGTGACAATGATTTGCCAGGTCTTACTGATGTTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGAAAGCTGTTCAACCTGTCAAAGGAGGATGATGTGCGAAAATATGTTAACACCTACCGTCGAACCTTTACCACCAAGGCCGGGAAAAAGGTTAGCAAAGCCCCAAAGATTCAACGTCTGGTCACTCCTTTGACACTCCAAAGGAAGCGTGCAAGAATTGCAGACAAGAAGAAGAGAATCGCCAAGGCAAAATCAGAGGCAGCAGAATATCAGAAACTCCTTGCATCCAGATTGAAGGAGCAGAGGGAACGCCGAAGTGAGAGCTTGGCAAAGAAGAGGTCTAGACTATCCACTGCTACAAAGCCAGTCACAGCTTAG	747	0.4699	MKFNVANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRLSTATKPVTA	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g03528	248	Coils	Coil	189	216	-	-
	Trre8g03528	248	Gene3D	-	133	234	-	-
	Trre8g03528	248	PIRSF	RPS6e	1	247	IPR014401	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g03528	248	ProSitePatterns	Ribosomal protein S6e signature.	52	63	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g03528	248	SMART	Ribosomal_S6e_2	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g03528	248	PANTHER	40S RIBOSOMAL PROTEIN S6	1	239	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g03528	248	Pfam	Ribosomal protein S6e	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g03528	248	MobiDBLite	consensus disorder prediction	220	237	-	-
	Trre8g03528	248	MobiDBLite	consensus disorder prediction	220	248	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g03528	Trre-Chr8	39426125	39428197	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g03528	1	248	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	73.494	3.49e-121	341

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g03528	K02991		-	sind:105176438	436.802