Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03523 ATGGAAACAAGAAGGTCAGAGGGCAAGAGGAATTTGAGGTACAAAGAAGAGGTGGATGATTCTCAATATGAGGAAGAAGATGAAGATGATATGGATTTTGAAGAGGAAGAGGATGGTAGAAGGAAGAGGGTAGTAACAGATCTCTATAGCAACAAGAGAGGTTCTAACAAAGCTGGTGGCTCAAATATTACACCTTGTTGTCAAGTTGAGAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTATCATCGGAGACATAAGGTTTGTGAGTATCATGCTAAGGCACCTGCCGTACACATTGCAGGGATGCAGCAAAGGTTTTGTCAGCAATGTAGCAGATTCCACGAGCTATCCGAATTTGATGACACAAAAAGGAGTTGTAGAAGGCGTTTGGCCGGACATAATGAGAGGCGTCGCAAAAATGCAAGTGATTATCAAGGAGAATAA 447 0.4228 METRRSEGKRNLRYKEEVDDSQYEEEDEDDMDFEEEEDGRRKRVVTDLYSNKRGSNKAGGSNITPCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIAGMQQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNASDYQGE 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03523 148 SUPERFAMILY SBT domain 65 144 IPR036893 GO:0003677|GO:0005634
Trre8g03523 148 Pfam SBP domain 67 140 IPR004333 GO:0003677
Trre8g03523 148 PIRSF SBP 1 148 IPR017238 GO:0003677|GO:0003700|GO:0009908
Trre8g03523 148 MobiDBLite consensus disorder prediction 1 41 - -
Trre8g03523 148 FunFam Squamosa promoter-binding-like protein 14 58 128 - -
Trre8g03523 148 Gene3D - 57 128 IPR036893 GO:0003677|GO:0005634
Trre8g03523 148 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 142 IPR044817 GO:0003677
Trre8g03523 148 MobiDBLite consensus disorder prediction 1 19 - -
Trre8g03523 148 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Trre8g03523 148 MobiDBLite consensus disorder prediction 20 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03523 Trre-Chr8 39253419 39256417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03523 57 144 SBP-box Gene Family AT2G33810 69.318 1.48e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre8g03523 SBP 4.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03523 - - gmx:100527199 198.364