Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03520 ATGCCGTCACAGAAGCGTTCTTTCGATGAGACTCTCGAAGAAAATGAAGAAGAGTCTGAGAACGAAATGAACAGCCAGGAGCAACATAACGATGAAGACGAATCAGATCAGAGCCATTCATCTGATAGTGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAAGAAAACGAAGATGAAGACGAAGAATATGTGGCTGTAAAATTGTCAGATGTACGCAAGGAAGTTCAGTGTCCTATCTGCCTTGGCATCATTCGAAAAACAAGAACCGTAATGGAGTGCTTACATCGCTTTTGCAGAGAGTGCATAGACAAATCCATGCGTCTTGGTAACAATGAATGTCCCGCTTGCCGTACACATTGTGCTAGCCGACGCTCTCTGAGAGATGACCCAAACTTTGATACTTTGATTGCTGCTCTCTATCCAGATATTGATAAGTATGAGGAAGAGGAATTGGCTTTGCATGAGGATGAGCTGGCTCGCCATAAGCAGTTCCAAGCATCTATTGCCCAAACGCTACAACGGCAATCTGAAGCATTGAGTAAGAAACGAAATGCCAAAGCAACACCAGTGGCTTTTGTGAGGAGATCACAAGGCAACTATCGAACTTCACATCTGAGACGCCGAAGAAACTTCAGAAATGCCGGTGACTTTCAGGTATCCAATGACAACAAGGGTATGAATGATAATGATGGGGGAAAGGACTCATCTTCTGATGATGGGCTGACAGAAACCCAGCCAAGAAGATGCAAAAGAGGTGGAGAACAAGAAGCACAAGCTCCTCAGCAGTCTGCCTCTACTGATCCAGATGGAGTTGGTGAAGAAAATACTCCAGAAGTAAATAGAGACATCATAAGTGCATCTGGTACACTTTCCTGGGGAAAAAATGGTCACCGGAGTCACAACCGAGTCAATGGAAAGAATGCCAAATGCAATCGCATCTCCAAATTGGTTGAACATCTTCGCAGCCCGGCAGCAAATGATTATGAGCTGCCTGCCTTTCTCATGCTTGTCTCGTTTGATGAGCAAAAAATGCCAAGTTTAAAGGATCCATACCTTACTTGCGAGCCTACTATGTCTGTTGAGAAACTGCGCAAGCTTGTTGCAAATGAAACTGCACTGACTGTGGATGAAGTTAAGTTGTGGTCGGTACTAAAGCCACAAACTAACATTGTAGATGGTGAAAGAACCGTTGATCCAGACAGAGATAATTTACGCGTTCTAGGCGACCAAGAAACATTGGCTGAATTGATGAGAGATTATGAAAATACCAGCTATGGTTATCTGGTCATGGCTTACAAGAGGAAGTTGCAGAATTCAGACACAATTGGGTTAAGCTGA 1359 0.4356 MPSQKRSFDETLEENEEESENEMNSQEQHNDEDESDQSHSSDSDEEEEEEEEEEEEEDEEEENEDEDEEYVAVKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDTLIAALYPDIDKYEEEELALHEDELARHKQFQASIAQTLQRQSEALSKKRNAKATPVAFVRRSQGNYRTSHLRRRRNFRNAGDFQVSNDNKGMNDNDGGKDSSSDDGLTETQPRRCKRGGEQEAQAPQQSASTDPDGVGEENTPEVNRDIISASGTLSWGKNGHRSHNRVNGKNAKCNRISKLVEHLRSPAANDYELPAFLMLVSFDEQKMPSLKDPYLTCEPTMSVEKLRKLVANETALTVDEVKLWSVLKPQTNIVDGERTVDPDRDNLRVLGDQETLAELMRDYENTSYGYLVMAYKRKLQNSDTIGLS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03520 452 SUPERFAMILY RING/U-box 67 155 - -
Trre8g03520 452 ProSiteProfiles Zinc finger RING-type profile. 84 124 IPR001841 -
Trre8g03520 452 CDD RING-HC_RING1-like 81 146 - -
Trre8g03520 452 MobiDBLite consensus disorder prediction 294 313 - -
Trre8g03520 452 ProSitePatterns Zinc finger RING-type signature. 100 109 IPR017907 -
Trre8g03520 452 SMART ring_2 84 123 IPR001841 -
Trre8g03520 452 Pfam Zinc finger, C3HC4 type (RING finger) 83 123 - -
Trre8g03520 452 MobiDBLite consensus disorder prediction 234 261 - -
Trre8g03520 452 MobiDBLite consensus disorder prediction 22 36 - -
Trre8g03520 452 Coils Coil 41 69 - -
Trre8g03520 452 MobiDBLite consensus disorder prediction 37 70 - -
Trre8g03520 452 MobiDBLite consensus disorder prediction 182 283 - -
Trre8g03520 452 MobiDBLite consensus disorder prediction 1 70 - -
Trre8g03520 452 Coils Coil 9 36 - -
Trre8g03520 452 PANTHER OS11G0578200 PROTEIN 1 444 IPR044592 -
Trre8g03520 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 147 IPR013083 -
Trre8g03520 452 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03520 Trre-Chr8 39177895 39187564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03520 66 224 C3H Transcription Factor Family AT2G30580 27.160 6.79e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03520 K10695 - qsu:112040979 419.468