Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03514 ATGTTTGCTCTATTACGAGTTTGTGAAAGGTTTGGAAAGAACCTATGCAGAAAAAAGAAATACCTAGTACACAGTTTCCCAGAAAAATTCAAGATGCAAATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTCGAAGTTGAGAGTTCAGATACAATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATATTTGTGAAGACTCTCACTGGTAAGACAATCACCCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTCAAGGTCAAGATTCAGGACAAAGAGGGTATTCCACCAGACCAGCAAAGGCTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACATTAGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTCCGTGGTGGCATGCAGATTTTTGTGAAGACCCTTACCGGAAAGACAATTACTTTGGAGGTTGAGAGCTCAGACACGATTGACAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGTTAATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAGACATTGACAGGTAAGACCATTACTTTGGAGGTAGAGAACTCAGACACAATTGACAATGTGAAGGTTAAGATACAGGACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATTTTCGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGATTATAACATTCAGAAAGAGTCCACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGATTGATCTTTCTTGGGAAGCAGTTGAAGGATGGAAGGACTGTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCATCTTGTTTTGCGCCTTCGTGGTGGATTTTAA 1113 0.4483 MFALLRVCERFGKNLCRKKKYLVHSFPEKFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKVKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVENSDTIDNVKVKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGLIFLGKQLKDGRTVADYNIQKESTLHLVLRLRGGF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03514 370 SUPERFAMILY Ubiquitin-like 182 259 IPR029071 -
Trre8g03514 370 SMART ubq_7 108 179 IPR000626 GO:0005515
Trre8g03514 370 SMART ubq_7 184 255 IPR000626 GO:0005515
Trre8g03514 370 SMART ubq_7 260 331 IPR000626 GO:0005515
Trre8g03514 370 SMART ubq_7 32 103 IPR000626 GO:0005515
Trre8g03514 370 CDD Ubl_ubiquitin 260 335 - -
Trre8g03514 370 SUPERFAMILY Ubiquitin-like 258 335 IPR029071 -
Trre8g03514 370 ProSitePatterns Ubiquitin domain signature. 134 159 IPR019954 -
Trre8g03514 370 Gene3D - 24 107 - -
Trre8g03514 370 Gene3D - 336 370 - -
Trre8g03514 370 Gene3D - 260 335 - -
Trre8g03514 370 Gene3D - 108 183 - -
Trre8g03514 370 Gene3D - 184 259 - -
Trre8g03514 370 CDD Ubl_ubiquitin 108 183 - -
Trre8g03514 370 FunFam Polyubiquitin 3 184 259 - -
Trre8g03514 370 ProSiteProfiles Ubiquitin domain profile. 32 107 IPR000626 GO:0005515
Trre8g03514 370 FunFam Ubiquitin-60S ribosomal L40 fusion 260 337 - -
Trre8g03514 370 ProSiteProfiles Ubiquitin domain profile. 184 259 IPR000626 GO:0005515
Trre8g03514 370 SUPERFAMILY Ubiquitin-like 107 183 IPR029071 -
Trre8g03514 370 ProSitePatterns Ubiquitin domain signature. 286 311 IPR019954 -
Trre8g03514 370 ProSiteProfiles Ubiquitin domain profile. 260 335 IPR000626 GO:0005515
Trre8g03514 370 SUPERFAMILY Ubiquitin-like 336 369 IPR029071 -
Trre8g03514 370 CDD Ubl_ubiquitin 184 259 - -
Trre8g03514 370 ProSitePatterns Ubiquitin domain signature. 58 83 IPR019954 -
Trre8g03514 370 ProSiteProfiles Ubiquitin domain profile. 108 183 IPR000626 GO:0005515
Trre8g03514 370 ProSiteProfiles Ubiquitin domain profile. 336 369 IPR000626 GO:0005515
Trre8g03514 370 FunFam Polyubiquitin 3 32 107 - -
Trre8g03514 370 PANTHER UBIQUITIN 336 369 - -
Trre8g03514 370 CDD Ubl_ubiquitin 32 107 - -
Trre8g03514 370 FunFam Polyubiquitin 3 108 183 - -
Trre8g03514 370 ProSitePatterns Ubiquitin domain signature. 210 235 IPR019954 -
Trre8g03514 370 Pfam Ubiquitin family 110 181 IPR000626 GO:0005515
Trre8g03514 370 Pfam Ubiquitin family 34 105 IPR000626 GO:0005515
Trre8g03514 370 Pfam Ubiquitin family 336 367 IPR000626 GO:0005515
Trre8g03514 370 Pfam Ubiquitin family 186 257 IPR000626 GO:0005515
Trre8g03514 370 Pfam Ubiquitin family 262 333 IPR000626 GO:0005515
Trre8g03514 370 SUPERFAMILY Ubiquitin-like 26 107 IPR029071 -
Trre8g03514 370 PRINTS Ubiquitin signature 84 105 IPR019956 -
Trre8g03514 370 PRINTS Ubiquitin signature 63 83 IPR019956 -
Trre8g03514 370 PRINTS Ubiquitin signature 42 62 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03514 Trre-Chr8 39108686 39113674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03514 260 337 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 96.154 5.70e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03514 - K08770 pavi:110774095 631.713