Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre8g03484 | ATGGAAGGTGAGGCTAGTTCGGAGGGGGATAGTGATCGGAAAAGGGGTGGTGGTGGAGATGATAACAGCGATGAAAATAACAACAATAAGAACAACAATAATGGAAGCAATAGCAAAATTGCGGTTTCTAATGAGGGGCAAAGCAAGCCTAAGAGACAGATGAAGACGCCGTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCTTTGGATAATTACCCTTCGGAGCCGGTGAGGATCGAGTTGTCTGAGAAATTGGGGTTGACGGATCGGCAATTGCAGATGTGGTTTTGCCATAGGAGGTTGAAGGATAAGAAGGAATCGGCTCCCAAGAAGGGGCCGCCACCACGGAAGCCAGTGGTGGAGCCTTTGCCGGATTCTCCGGTGGATGACCTCAGAATGGTCTCTGAGCATGGTAATGGGTATGGATCAGGGTCGGGTTCAGGTTCCAGTCTGTCTACTCGGTTGGAGGGCCGGAATGCAATCCCCCTGAGTGTTGGTTATTATGAGTCTCCGCAGGTTGAAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGATCAGTTAGGTGAACCCTTGAGGGAACATGGACCCATTCTAGGAGTGGAGTTTGATACATTGCCACCAGATGCTTTTGGAGCACCTATAGTTACAGAACACCAGAAGCGACCTCGTCTTACCTATGACAGTAAAATGTATGGAAGACATGATGGTAGAACAAACAAGGCTATGGCAAGGACATCCCTTGAATATCAACATCTACCAAACCAGTCTGGCATTAAACCTGATGCTTTTGGACAGTTCGGCCAATCTCATTTACATACTCCGAAGGAGGGTCCTTCGAGAAACTCTCCACTACCTAGAATTCATGCCACCAAGGGTCATTCTTCTCGTGTTTCTCTTTTGTCTCAAAAAGACAAGAAAGTGAGTCCCTACCAATCTCCTCCTCGGGATGATGTTGTCCCTACACAGGAGTTGTACACAAACACGGCGAATGTTGGAATGAACTCCCACCAAACTGATTGCCAAACTGGTGGGTCAGAAAATCCCTATGCTTCACCCAGTGGACAAATTTTTCAAAACAATGCAACACATAACGATAGGAAACGGAAGGGTGATGATGCCAAAATTACAAGGGATGTTGAAGGCAATGAGATGAGAATCCAGAGAGAGCTCGAAAAACAAGATAACCTTAGAAGAAAGAATGAGGAGCGGATAAGGAAAGAAATGGAGAGACAAGATCGTGAAAGGAGAAAGGAAGAAGAGAGATTGATGCGTGAGAGACAACGGGAAGAGGAAAGAACAAAACGAGAGGAAAAACGTGAAATTGAACGAAGGGAAAAGTATTTGCTGAAAGAAAATTTAAAAGCCGAGAGAATGAGGCAAAAAGAAGAGCTTCGGAAAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCACATGCCCGTAAAATAGCTAAGGAATCCATGGAACTTATTGAGGATGAACAACTGGAAATGATGGAGTTAGCTGCTTCAAACAAGGGGCTTTCCTCTATTATCCATCTTGATTTTGATACTTTGCAAAACATTGAATCGTTTAGGGGTTCACTGTGTGTTTTCCCACCCGAGAATGTAAAGCTAAGAAAACCATTTGCTATCCAACCGTGGATCAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAGGTTTTTGATTACCTTTGCTGATGTTCTGGAATTATGGCCTTTTACTCTTGATGAGTTCGTGCAAGCATTTCACGATTATGATTCAAGATTGTTAGGTGAGATACATGTTGCTATCCTTAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTGTTACAGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGCTAGGATTGTCTGCAGGATATGGACCACAGTTTAAGAAAAGAAGTATTACAAGTTCACGTGCAAATAGTAAAGATGAGGGAAGAAGCTGTGAAGATGTCATTTCTGCACTTCGTAATGGTTCAGCAGCTGGAAATGCGGTGGCAAAAATGCAGGAGAGAGGTCTACTAGGACCTCGAAGGTCTAGGCATCGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCATGTTCTCTCGCTAGAGAGTGGCGAGGGATTGAATGTGATAGAGCTTGCCGAGAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAGTAGCCCCATCAACTTATTGTGTACGTGCTGCATTTAGAAAGGATCCTGCTGATGCCGAGTCCATTCTTTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAGGAAGATGCTGATGATGGTGAAAGAGAAGAGTCGGAAAGTGAAGTGGATGAGGATCCTGAAGTTGATGATTTGGTTAATCCTTCAAGTGTTAACAAAACATCTGAACATTGTAATGATTTTTCATCAAGTGGAAAAGAAAATCTTGGTCATGATGCAGAACTTAAAGATGAGTTCGATAAGGATCTGCCTTGTTATCCTGACAATGGTTCTAAGAATGCTGATCGTCCGCGTGCTGTTTCTGGACAATCTGTTGCTTCTGAAAATCTAAATGCCAGAAATCTAGGTGAAGATAACATGGAAATTGATGAAAGTAAGTCTGGAGAGTCATGGATTCAAGGGCTTACTGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGGTTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCCCTGAAGAAGCAAATGTTGGCAGAAGCAGCAATAGATAAAATTCGCCTGAGAGATGATAATGTCATTAAATCAGATTTTCCTTCTATCAAGGCTGAAACACAGCTTACATGTGCTGCTGTGGAGGGCAATCAAAGCCCCTTGCTTGATATTAATAGTTGCAATAATAATAATAACGAGGAATCTCCCAGCAAAACAGAAAATAAGAGACTATCTCTTGTTGGACAAAACCTTTCTGAAAAGCTCTCATCAGGTCAAGATCTCTGCATAGGTCCTGATAATCCTCAGACCCTGTTATCTGCGCAATATTCAAAACGGTCACGATCTCAATTGAAATCTTATATTTCCCACCTAGCAGAGGAGATGTACATCTATAGATCCTTACCCCTTGGGCAAGACCGCAGACATAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCGGGAAGGATCTTTGTTGAATATCATGATGGCAAATGGAGGCTTATTGATTCTGAAGAGGCCTTTGACGCCCTTCTGAACTCACTGGATTCACGTGGCATCCGGGAATCACATTTGCGTCTAATGTTGCTAAAGATTGAGAATATATTTAAGGAAAATGTTCAAAAGAAAGCAAAATGTGCCAAAGTCGATAACACAGATGAAATCCGTGTTAAAAATGAAGCTGATGAAACAGATTCCAGCCCTGATAACCACACTAGATCTGACAGTCCTAGTAGTACTCTTTGTGGCTTGAGCTCTGATACTTCAGAAACTTCGTCATCCTTCAGAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAAGCTGCCTTGGGAAGGTATCAAGATTTTCAAAAATGGATGTGGAAAGAATGTTATAACCCATCAATATTATGTGCAATGAAATTTGGGGAAAAGAGATGCAAACCTCAGGTTGACATATGTGATACCTGTCTCGACCTTTATTGCTTGGAAGATTCCCATTGCAGTTATTGCCACCGCACTTTTCCATCAAGTGATGGATTTAATTTTTCTGAACATGCTTTTGAATGTCGGAACAAGTTACCCAAAGATATTTGTATTCTGGATTCTTCTCTTCCTCTGAGGACAAGACTGCTCAAGGCCATACTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTGCAATCAATTTGGACAGAAGATATTAGGAGGCTCTGGGGTGTGAAGTTGAACAGATCTTCTTCTGTAGAGGAACTTCTACAGATATTGACTCTATTTGAGAGAGGACTAAAGCGAGATTTTTTATCATCATCCTTCTCTACAATTGGGGACTTGTTGGGGACGAGCACTAGGTCGGAGAGTGCTGCACATAATTCCATGGATCTTGAATCAGTTCCTGTTCTTCCATGGGTTCCGCGGACCACTTCAGCTGTGTCTCTGAGACTTTTTGAGTTTGACACCTCCATCGCTTACGTTAAGCTAGAGAAACCTGAGCTGTGTGAGGAGAAAGAAGCTAGATACATAAAGCTTCCTTCAAGATATGCTTCTGTCAAATCTACTAAAGTGGTTGAGCCGGCAGACTTGGATCATGATGAATTAATGAAAGTGAAATCTGCTCCTATTGTGCACAGCAGCAAAAAACGGGGACGAGTGAATCATGATAAAGGAAGGTCTAAAAAACTGTTTAAAAGAACGGATGATTCCAAACGAGATAATGTCCACCACAATTTTATGGTCACTGATAATCTAAGTCAAAGAATAAAACAGCAGGGACAAGGATCACAAGGACAAGCAGGTGGACGTGGCCGTCGGACAGTCAGGAAAAGGAGAGCGGAGAAGAGGGTTGTTGAAGATTTTTTACTGGATGATAGGGCTGCCAATCATAGCTTCACTTTTGGTAGAGAACCATCAAGAATCTTGGATGAGGACTGGAATGTTGAGAAGACTGGTCCCATCCATATGGAAGCTGCTGACATGAGTAGCAGCAGTGAAGAGGTTGAATATGATGACAACGTCCAGGCAGTTGAATCTGATGACAATGTTGAAGCAGTAGAGTACGGTCAAGGAAACTGGGAGATAGGTTTTAATGGTACACCCAACAGATGGAATAGGGATTTGGTCGGAATGAGTGATGAAGAAGATGCAGAAGTTTTTGAAGATGACAATAACAATGGCATTGAAGAGAATGAAGAGGAAGAGGAGGAGGACGAGGAGGAGGGTTTTGAGGCAGATGTTATGAGCGAGGGTTCAGATGGTATGGCCAATAATAGAGTTGTAAATGAAGAAAGCTCAGACTCGAGTGACTCCGAAGATTCTTCTGATTAG | 5274 | 0.427 | MEGEASSEGDSDRKRGGGGDDNSDENNNNKNNNNGSNSKIAVSNEGQSKPKRQMKTPFQLETLEKAYALDNYPSEPVRIELSEKLGLTDRQLQMWFCHRRLKDKKESAPKKGPPPRKPVVEPLPDSPVDDLRMVSEHGNGYGSGSGSGSSLSTRLEGRNAIPLSVGYYESPQVEMELRAIACVEDQLGEPLREHGPILGVEFDTLPPDAFGAPIVTEHQKRPRLTYDSKMYGRHDGRTNKAMARTSLEYQHLPNQSGIKPDAFGQFGQSHLHTPKEGPSRNSPLPRIHATKGHSSRVSLLSQKDKKVSPYQSPPRDDVVPTQELYTNTANVGMNSHQTDCQTGGSENPYASPSGQIFQNNATHNDRKRKGDDAKITRDVEGNEMRIQRELEKQDNLRRKNEERIRKEMERQDRERRKEEERLMRERQREEERTKREEKREIERREKYLLKENLKAERMRQKEELRKEKEAERRKAALEKAHARKIAKESMELIEDEQLEMMELAASNKGLSSIIHLDFDTLQNIESFRGSLCVFPPENVKLRKPFAIQPWINSEENVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAILKVIIKDIEDVARTPVTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLGLSAGYGPQFKKRSITSSRANSKDEGRSCEDVISALRNGSAAGNAVAKMQERGLLGPRRSRHRLTPGTVKFAAFHVLSLESGEGLNVIELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERVAPSTYCVRAAFRKDPADAESILSEARKKIQIFENGFLAEEDADDGEREESESEVDEDPEVDDLVNPSSVNKTSEHCNDFSSSGKENLGHDAELKDEFDKDLPCYPDNGSKNADRPRAVSGQSVASENLNARNLGEDNMEIDESKSGESWIQGLTEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMLAEAAIDKIRLRDDNVIKSDFPSIKAETQLTCAAVEGNQSPLLDINSCNNNNNEESPSKTENKRLSLVGQNLSEKLSSGQDLCIGPDNPQTLLSAQYSKRSRSQLKSYISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGKWRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKKAKCAKVDNTDEIRVKNEADETDSSPDNHTRSDSPSSTLCGLSSDTSETSSSFRIELGKSESDKKAALGRYQDFQKWMWKECYNPSILCAMKFGEKRCKPQVDICDTCLDLYCLEDSHCSYCHRTFPSSDGFNFSEHAFECRNKLPKDICILDSSLPLRTRLLKAILAFIEVSVPPEALQSIWTEDIRRLWGVKLNRSSSVEELLQILTLFERGLKRDFLSSSFSTIGDLLGTSTRSESAAHNSMDLESVPVLPWVPRTTSAVSLRLFEFDTSIAYVKLEKPELCEEKEARYIKLPSRYASVKSTKVVEPADLDHDELMKVKSAPIVHSSKKRGRVNHDKGRSKKLFKRTDDSKRDNVHHNFMVTDNLSQRIKQQGQGSQGQAGGRGRRTVRKRRAEKRVVEDFLLDDRAANHSFTFGREPSRILDEDWNVEKTGPIHMEAADMSSSSEEVEYDDNVQAVESDDNVEAVEYGQGNWEIGFNGTPNRWNRDLVGMSDEEDAEVFEDDNNNGIEENEEEEEEDEEEGFEADVMSEGSDGMANNRVVNEESSDSSDSEDSSD | 1757 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 1694 | 1757 | - | - | |
| Trre8g03484 | 1757 | Pfam | Homeodomain | 49 | 105 | IPR001356 | GO:0003677 | |
| Trre8g03484 | 1757 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 1116 | 1188 | IPR028941 | - | |
| Trre8g03484 | 1757 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 29 | 1757 | IPR044977 | GO:0006357 | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 294 | 308 | - | - | |
| Trre8g03484 | 1757 | Coils | Coil | 1698 | 1718 | - | - | |
| Trre8g03484 | 1757 | CDD | homeodomain | 51 | 107 | IPR001356 | GO:0003677 | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 880 | 898 | - | - | |
| Trre8g03484 | 1757 | Coils | Coil | 979 | 999 | - | - | |
| Trre8g03484 | 1757 | SMART | testlast3 | 554 | 613 | IPR018501 | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 860 | 879 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 332 | 375 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 407 | 439 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 22 | 55 | - | - | |
| Trre8g03484 | 1757 | Pfam | HB1, ASXL, restriction endonuclease HTH domain | 736 | 804 | IPR007759 | GO:0006355 | |
| Trre8g03484 | 1757 | Coils | Coil | 401 | 444 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 1213 | 1251 | - | - | |
| Trre8g03484 | 1757 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 940 | 983 | IPR028942 | - | |
| Trre8g03484 | 1757 | ProSiteProfiles | DDT domain profile. | 554 | 613 | IPR018501 | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 332 | 361 | - | - | |
| Trre8g03484 | 1757 | ProSiteProfiles | 'Homeobox' domain profile. | 46 | 106 | IPR001356 | GO:0003677 | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 1566 | 1582 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 1566 | 1592 | - | - | |
| Trre8g03484 | 1757 | Coils | Coil | 450 | 487 | - | - | |
| Trre8g03484 | 1757 | Pfam | DDT domain | 555 | 610 | IPR018501 | - | |
| Trre8g03484 | 1757 | Gene3D | - | 20 | 107 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 832 | 857 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 832 | 921 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 101 | 153 | - | - | |
| Trre8g03484 | 1757 | SUPERFAMILY | Homeodomain-like | 38 | 106 | IPR009057 | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 1695 | 1728 | - | - | |
| Trre8g03484 | 1757 | SMART | HOX_1 | 48 | 110 | IPR001356 | GO:0003677 | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 1227 | 1251 | - | - | |
| Trre8g03484 | 1757 | MobiDBLite | consensus disorder prediction | 253 | 320 | - | - | |
| Trre8g03484 | 1757 | ProSiteProfiles | HARE-type HTH domain profile. | 736 | 805 | IPR007759 | GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre8g03484 | Trre-Chr8 | 38835003 | 38844044 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre8g03484 | 43 | 1683 | Homeobox Transcription Factor Family | AT1G28420 | 48.126 | 0.0 | 1299 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | HB-other | Trre8g03484 | WSD | 8.6e-16 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre8g03484 | - | - | gmx:100818817 | 2224.51 |