Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03483 ATGGAAGGTGAGGCTAGTTCGGAGGGGGATAGTGATCGGAAAAGGGGTGGTGGTGGAGATGATAACAGCGATGAAAATAACAACAATAAGAACAACAATAATGGAAGCAATAGCAAAATTGCGGTTTCTAATGAGGGGCAAAGCAAGCCTAAGAGACAGATGAAGACGCCGTTTCAGCTTGAAACCCTTGAGAAAGCTTATGCTTTGGATAATTACCCTTCGGAGCCGGTGAGGATCGAGTTGTCTGAGAAATTGGGGTTGACGGATCGGCAATTGCAGATGTGGTTTTGCCATAGGAGGTTGAAGGATAAGAAGGAATCGGCTCCCAAGAAGGGGCCGCCACCACGGAAGCCAGTGGTGGAGCCTTTGCCGGATTCTCCGGTGGATGACCTCAGAATGGTCTCTGAGCATGGTAATGGGTATGGATCAGGGTCGGGTTCAGGTTCCAGTCTGTCTACTCGGTTGGAGGGCCGGAATGCAATCCCCCTGAGTGTTGGTTATTATGAGTCTCCGCAGGTTGAAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGATCAGTTAGGTGAACCCTTGAGGGAACATGGACCCATTCTAGGAGTGGAGTTTGATACATTGCCACCAGATGCTTTTGGAGCACCTATAGCAGTTACAGAACACCAGAAGCGACCTCGTCTTACCTATGACAGTAAAATGTATGGAAGACATGATGGTAGAACAAACAAGGCTATGGCAAGGACATCCCTTGAATATCAACATCTACCAAACCAGTCTGGCATTAAACCTGATGCTTTTGGACAGTTCGGCCAATCTCATTTACATACTCCGAAGGAGGGTCCTTCGAGAAACTCTCCACTACCTAGAATTCATGCCACCAAGGGTCATTCTTCTCGTGTTTCTCTTTTGTCTCAAAAAGACAAGAAAGTGAGTCCCTACCAATCTCCTCCTCGGGATGATGTTGTCCCTACACAGGAGTTGTACACAAACACGGCGAATGTTGGAATGAACTCCCACCAAACTGATTGCCAAACTGGTGGGTCAGAAAATCCCTATGCTTCACCCAGTGGACAAATTTTTCAAAACAATGCAACACATAACGATAGGAAACGGAAGGGTGATGATGCCAAAATTACAAGGGATGTTGAAGGCAATGAGATGAGAATCCAGAGAGAGCTCGAAAAACAAGATAACCTTAGAAGAAAGAATGAGGAGCGGATAAGGAAAGAAATGGAGAGACAAGATCGTGAAAGGAGAAAGGAAGAAGAGAGATTGATGCGTGAGAGACAACGGGAAGAGGAAAGAACAAAACGAGAGGAAAAACGTGAAATTGAACGAAGGGAAAAGTATTTGCTGAAAGAAAATTTAAAAGCCGAGAGAATGAGGCAAAAAGAAGAGCTTCGGAAAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCACATGCCCGTAAAATAGCTAAGGAATCCATGGAACTTATTGAGGATGAACAACTGGAAATGATGGAGTTAGCTGCTTCAAACAAGGGGCTTTCCTCTATTATCCATCTTGATTTTGATACTTTGCAAAACATTGAATCGTTTAGGGGTTCACTGTGTGTTTTCCCACCCGAGAATGTAAAGCTAAGAAAACCATTTGCTATCCAACCGTGGATCAACTCAGAAGAGAATGTTGGCAACCTTCTCATGGTTTGGAGGTTTTTGATTACCTTTGCTGATGTTCTGGAATTATGGCCTTTTACTCTTGATGAGTTCGTGCAAGCATTTCACGATTATGATTCAAGATTGTTAGGTGAGATACATGTTGCTATCCTTAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTGTTACAGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGCTTTGACATACGGAATTGGCATAAGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGCTAGGATTGTCTGCAGGATATGGACCACAGTTTAAGAAAAGAAGTATTACAAGTTCACGTGCAAATAGTAAAGATGAGGGAAGAAGCTGTGAAGATGTCATTTCTGCACTTCGTAATGGTTCAGCAGCTGGAAATGCGGTGGCAAAAATGCAGGAGAGAGGTCTACTAGGACCTCGAAGGTCTAGGCATCGGTTAACTCCTGGAACAGTTAAGTTTGCAGCATTTCATGTTCTCTCGCTAGAGAGTGGCGAGGGATTGAATGTGATAGAGCTTGCCGAGAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTGACAAGAGATGCCAAGCTTTTTGAAAGAGTAGCCCCATCAACTTATTGTGTACGTGCTGCATTTAGAAAGGATCCTGCTGATGCCGAGTCCATTCTTTCTGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGAGGAAGATGCTGATGATGGTGAAAGAGAAGAGTCGGAAAGTGAAGTGGATGAGGATCCTGAAGTTGATGATTTGGTTAATCCTTCAAGTGTTAACAAAACATCTGAACATTGTAATGATTTTTCATCAAGTGGAAAAGAAAATCTTGGTCATGATGCAGAACTTAAAGATGAGTTCGATAAGGATCTGCCTTGTTATCCTGACAATGGTTCTAAGAATGCTGATCGTCCGCGTGCTGTTTCTGGACAATCTGTTGCTTCTGAAAATCTAAATGCCAGAAATCTAGGTGAAGATAACATGGAAATTGATGAAAGTAAGTCTGGAGAGTCATGGATTCAAGGGCTTACTGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGGTTAAATGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCCCTGAAGAAGCAAATGTTGGCAGAAGCAGCAATAGATAAAATTCGCCTGAGAGATGATAATGTCATTAAATCAGATTTTCCTTCTATCAAGGCTGAAACACAGCTTACATGTGCTGCTGTGGAGGGCAATCAAAGCCCCTTGCTTGATATTAATAGTTGCAATAATAATAATAACGAGGAATCTCCCAGCAAAACAGAAAATAAGAGACTATCTCTTGTTGGACAAAACCTTTCTGAAAAGCTCTCATCAGGTCAAGATCTCTGCATAGGTCCTGATAATCCTCAGACCCTGTTATCTGCGCAATATTCAAAACGGTCACGATCTCAATTGAAATCTTATATTTCCCACCTAGCAGAGGAGATGTACATCTATAGATCCTTACCCCTTGGGCAAGACCGCAGACATAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGCTCGGGAAGGATCTTTGTTGAATATCATGATGGCAAATGGAGGCTTATTGATTCTGAAGAGGCCTTTGACGCCCTTCTGAACTCACTGGATTCACGTGGCATCCGGGAATCACATTTGCGTCTAATGTTGCTAAAGATTGAGAATATATTTAAGGAAAATGTTCAAAAGAAAGCAAAATGTGCCAAAGTCGATAACACAGATGAAATCCGTGTTAAAAATGAAGCTGATGAAACAGATTCCAGCCCTGATAACCACACTAGATCTGACAGTCCTAGTAGTACTCTTTGTGGCTTGAGCTCTGATACTTCAGAAACTTCGTCATCCTTCAGAATTGAGCTTGGGAAAAGTGAGAGCGACAAGAAAGCTGCCTTGGGAAGGTATCAAGATTTTCAAAAATGGATGTGGAAAGAATGTTATAACCCATCAATATTATGTGCAATGAAATTTGGGGAAAAGAGATGCAAACCTCAGGTTGACATATGTGATACCTGTCTCGACCTTTATTGCTTGGAAGATTCCCATTGCAGTTATTGCCACCGCACTTTTCCATCAAGTGATGGATTTAATTTTTCTGAACATGCTTTTGAATGTCGGAACAAGTTACCCAAAGATATTTGTATTCTGGATTCTTCTCTTCCTCTGAGGACAAGACTGCTCAAGGCCATACTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTGCAATCAATTTGGACAGAAGATATTAGGAGGCTCTGGGGTGTGAAGTTGAACAGATCTTCTTCTGTAGAGGAACTTCTACAGATATTGACTCTATTTGAGAGAGGACTAAAGCGAGATTTTTTATCATCATCCTTCTCTACAATTGGGGACTTGTTGGGGACGAGCACTAGGTCGGAGAGTGCTGCACATAATTCCATGGATCTTGAATCAGTTCCTGTTCTTCCATGGGTTCCGCGGACCACTTCAGCTGTGTCTCTGAGACTTTTTGAGTTTGACACCTCCATCGCTTACGTTAAGCTAGAGAAACCTGAGCTGTGTGAGGAGAAAGAAGCTAGATACATAAAGCTTCCTTCAAGATATGCTTCTGTCAAATCTACTAAAGTGGTTGAGCCGGCAGACTTGGATCATGATGAATTAATGAAAGTGAAATCTGCTCCTATTGTGCACAGCAGCAAAAAACGGGGACGAGTGAATCATGATAAAGGAAGGTCTAAAAAACTGTTTAAAAGAACGGATGATTCCAAACGAGATAATGTCCACCACAATTTTATGGTCACTGATAATCTAAGTCAAAGAATAAAACAGCAGGGACAAGGATCACAAGGACAAGCAGGTGGACGTGGCCGTCGGACAGTCAGGAAAAGGAGAGCGGAGAAGAGGGTTGTTGAAGATTTTTTACTGGATGATAGGGCTGCCAATCATAGCTTCACTTTTGGTAGAGAACCATCAAGAATCTTGGATGAGGACTGGAATGTTGAGAAGACTGGTCCCATCCATATGGAAGCTGCTGACATGAGTAGCAGCAGTGAAGAGGTTGAATATGATGACAACGTCCAGGCAGTTGAATCTGATGACAATGTTGAAGCAGTAGAGTACGGTCAAGGAAACTGGGAGATAGGTTTTAATGGTACACCCAACAGATGGAATAGGGATTTGGTCGGAATGAGTGATGAAGAAGATGCAGAAGTTTTTGAAGATGACAATAACAATGGCATTGAAGAGAATGAAGAGGAAGAGGAGGAGGACGAGGAGGAGGGTTTTGAGGCAGATGTTATGAGCGAGGGTTCAGATGGTATGGCCAATAATAGAGTTGTAAATGAAGAAAGCTCAGACTCGAGTGACTCCGAAGATTCTTCTGATTAG 5277 0.4271 MEGEASSEGDSDRKRGGGGDDNSDENNNNKNNNNGSNSKIAVSNEGQSKPKRQMKTPFQLETLEKAYALDNYPSEPVRIELSEKLGLTDRQLQMWFCHRRLKDKKESAPKKGPPPRKPVVEPLPDSPVDDLRMVSEHGNGYGSGSGSGSSLSTRLEGRNAIPLSVGYYESPQVEMELRAIACVEDQLGEPLREHGPILGVEFDTLPPDAFGAPIAVTEHQKRPRLTYDSKMYGRHDGRTNKAMARTSLEYQHLPNQSGIKPDAFGQFGQSHLHTPKEGPSRNSPLPRIHATKGHSSRVSLLSQKDKKVSPYQSPPRDDVVPTQELYTNTANVGMNSHQTDCQTGGSENPYASPSGQIFQNNATHNDRKRKGDDAKITRDVEGNEMRIQRELEKQDNLRRKNEERIRKEMERQDRERRKEEERLMRERQREEERTKREEKREIERREKYLLKENLKAERMRQKEELRKEKEAERRKAALEKAHARKIAKESMELIEDEQLEMMELAASNKGLSSIIHLDFDTLQNIESFRGSLCVFPPENVKLRKPFAIQPWINSEENVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAILKVIIKDIEDVARTPVTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLGLSAGYGPQFKKRSITSSRANSKDEGRSCEDVISALRNGSAAGNAVAKMQERGLLGPRRSRHRLTPGTVKFAAFHVLSLESGEGLNVIELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERVAPSTYCVRAAFRKDPADAESILSEARKKIQIFENGFLAEEDADDGEREESESEVDEDPEVDDLVNPSSVNKTSEHCNDFSSSGKENLGHDAELKDEFDKDLPCYPDNGSKNADRPRAVSGQSVASENLNARNLGEDNMEIDESKSGESWIQGLTEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMLAEAAIDKIRLRDDNVIKSDFPSIKAETQLTCAAVEGNQSPLLDINSCNNNNNEESPSKTENKRLSLVGQNLSEKLSSGQDLCIGPDNPQTLLSAQYSKRSRSQLKSYISHLAEEMYIYRSLPLGQDRRHNRYWQFVASASCNDPGSGRIFVEYHDGKWRLIDSEEAFDALLNSLDSRGIRESHLRLMLLKIENIFKENVQKKAKCAKVDNTDEIRVKNEADETDSSPDNHTRSDSPSSTLCGLSSDTSETSSSFRIELGKSESDKKAALGRYQDFQKWMWKECYNPSILCAMKFGEKRCKPQVDICDTCLDLYCLEDSHCSYCHRTFPSSDGFNFSEHAFECRNKLPKDICILDSSLPLRTRLLKAILAFIEVSVPPEALQSIWTEDIRRLWGVKLNRSSSVEELLQILTLFERGLKRDFLSSSFSTIGDLLGTSTRSESAAHNSMDLESVPVLPWVPRTTSAVSLRLFEFDTSIAYVKLEKPELCEEKEARYIKLPSRYASVKSTKVVEPADLDHDELMKVKSAPIVHSSKKRGRVNHDKGRSKKLFKRTDDSKRDNVHHNFMVTDNLSQRIKQQGQGSQGQAGGRGRRTVRKRRAEKRVVEDFLLDDRAANHSFTFGREPSRILDEDWNVEKTGPIHMEAADMSSSSEEVEYDDNVQAVESDDNVEAVEYGQGNWEIGFNGTPNRWNRDLVGMSDEEDAEVFEDDNNNGIEENEEEEEEDEEEGFEADVMSEGSDGMANNRVVNEESSDSSDSEDSSD 1758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03483 1758 Pfam Homeodomain 49 105 IPR001356 GO:0003677
Trre8g03483 1758 Coils Coil 451 488 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 1 59 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 861 880 - -
Trre8g03483 1758 CDD homeodomain 51 107 IPR001356 GO:0003677
Trre8g03483 1758 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 941 984 IPR028942 -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 1228 1252 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 333 362 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 1567 1583 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 1567 1593 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 833 858 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 22 55 - -
Trre8g03483 1758 Coils Coil 980 1000 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 881 899 - -
Trre8g03483 1758 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1117 1189 IPR028941 -
Trre8g03483 1758 Pfam HB1, ASXL, restriction endonuclease HTH domain 737 805 IPR007759 GO:0006355
Trre8g03483 1758 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
Trre8g03483 1758 MobiDBLite consensus disorder prediction 1214 1252 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 254 320 - -
Trre8g03483 1758 Gene3D - 20 107 - -
Trre8g03483 1758 Pfam DDT domain 556 611 IPR018501 -
Trre8g03483 1758 Coils Coil 1699 1719 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 1696 1729 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 833 929 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 1 21 - -
Trre8g03483 1758 ProSiteProfiles DDT domain profile. 555 614 IPR018501 -
Trre8g03483 1758 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 29 1758 IPR044977 GO:0006357
Trre8g03483 1758 Coils Coil 402 445 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 101 153 - -
Trre8g03483 1758 SUPERFAMILY Homeodomain-like 38 106 IPR009057 -
Trre8g03483 1758 SMART HOX_1 48 110 IPR001356 GO:0003677
Trre8g03483 1758 MobiDBLite consensus disorder prediction 1695 1758 - -
Trre8g03483 1758 ProSiteProfiles HARE-type HTH domain profile. 737 806 IPR007759 GO:0006355
Trre8g03483 1758 MobiDBLite consensus disorder prediction 333 376 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 408 440 - -
Trre8g03483 1758 SMART testlast3 555 614 IPR018501 -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 295 309 - -
Trre8g03483 1758 MobiDBLite consensus disorder prediction 910 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03483 Trre-Chr8 38835003 38844044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03483 43 1684 Homeobox Transcription Factor Family AT1G28420 48.157 0.0 1305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre8g03483 WSD 8.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03483 - - gmx:100818817 2226.44