Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03474 ATGGAAGAACAAAAACAAATCCCTTTCATTTACATTTACATTGTTCTATCAACAATCTTATCTCTATCAACAACCGTAACATCATTGAACCAAGAAGGGTTGTACCTGTACCAATTCAAGCTAACCTTAGACGATCCAGACTCATTTCTCTCATCATGGAACCCAAGAGACACAACACCATGTAACTGGTACGGTATACGCTGCGATACAACAAACACCACCGTAACAGAACTTAACCTCTCCAACACAAACATTCAAGGTCCATTCACGGCGTCAATTCTCTGCCGTCTACCTAACCTCTCTTCCATAAACCTCTTCAACAACTCCATTAACCAAACCTTCCCTCTCCAAATCTCTCTCTGTAACAACCTAATTCATCTCGACCTCTCCCAAAATCTCCTCACTGGTTCTCTCCCTCAAACACTCTCTCTCCTCCCTAACCTCCGTTATCTCGACCTAACCGGTAACAACTTCTCCGGTTCAATCCCAATCTCTTTCGGAACATTCCAGAAACTCGAGGTTCTATCTTTAGTCTCGAATCTTCTAGAAGGTACTATTCCTCCTTCTCTTGGCAACATAACCACTTTAAAAATGCTTAACCTCTCTTACAACCCGTTTTTCCCGGGTCGGATTCCGTTAGAGCTTGGAAATTTAACTAACCTTGAAGTTCTATGGTTAACACAATGCAATCTCGTTGGTGTTATTCCTGAAACGCTTGGGAAACTTAAGAAGCTTAAGGATTTGGACCTTGCGTTGAACGATTTGTATGGTTCTATACCGAGTTCGCTCACTGAGTTAACTAGTTTGAGACAGATTGAGTTGTATAATAACTCGTTGTCTGGTGAGTTGCCTCGGGGAATGGGGAATCTTACTTCGTTGAGGCTACTTGATGCTTCGATGAATCATTTAACGGGGAAGATTCCGGAGGAACTTTGTTCGTTGCCGTTGGAGAGTCTTAATTTGTATGAGAATCGTTTTGAGGGTGAGTTACCGGCGAGTATAGCTAACTCGCCGAATTTGTATGAGCTGAGATTGTTTGGAAATCGGCTTACCGGAAAGTTGCCGGAGAATCTTGGGAAGCGTTCTCCGTTGAAGTGGCTTGATGTTTCGAGTAATCAGTTTTGGGGGAGTATTCCGGCGAGTTTGTGTGATCTTGGTGAGTTGGAGGAGCTTCTTGTGATATATAATTTATTCACCGGTGAGATTCCGGCTAGTTTGGGGACGTGTCAGAGTTTGACACGTGTGCGTCTCGGTTATAATAGGTTTTCCGGTGAGGTTCCGGCAGGTATCTGGGGTCTTCCTCATGTGTATCTTCTTGAGCTTGCTCATAACTCGTTTTCCGGTTCCATTTCGAAGACTATTGCCGGAGCAGGGAACCTTTCGTTGTTGATTTTGTCGAAAAACAACTTCTCGGGAACTGTTCCCGATGAAGTTGGGTGGTTGGAAAATCTTGTCGAGTTTTCTGCCGGTGACAACATGTTCAGTGGCTCACTTCCTGATAGTTTGGTGAATCTTGGTCAGCTTGGGATTCTTGATTTTCACAACAATAGGCTCTCTGGGGAATTACCAAAGGGGATTCATTCTTGGAAAAAGCTTAATGATTTGAATTTGGCTAACAATGAGATTGGTGGGATGATTCCTGATGAAATTGGTAGCTTATCTGTGCTTAATTTTCTTGATCTTTCCCGGAATCAATTTTCCGGTAAAATCCCTCATGGGTTGCAGAATCTGAAGCTTAATCAGCTCAACTTGTCGTATAATCGTCTTTCGGGAGAACTTCCTCCTCAGTTGGCTAAGGAAATGTACAAGTCTAGTTTCCTTGGTAATCCTGGTTTGTGTGGAGATTTGAAAGGTTTGTGTGATGGTAGAAATGAAGTAAAGAACCTCGGTTATATTTGGTTGCTTCGAGTAATTTTCCTTGTTGCCATTTTGGTGTTACTGGTTGGTGTTGTCTTGTTCTACTTTAGGTACAAGAATTTCAAAGACGCGAAAAGGGCTATTGATAAATCAAAATGGACTTTGATGTCATTTCATAAACTGGGTTTTGGTGAAGATGAGATTTTGAATTGTCTTGATGAAGATAATGTCATTGGAAGTGGTTCATCCGGGAAGGTTTACAAGGTTGTACTTAACAGTGGAGAAGCTGTTGCTGTGAAGAAGATATGGGGAGGTGTTAGGAAGGAAGTGGAGAGTGGAGATGCTGAGAAAGGTAGGGTTCAAGACAATGCTTTTGATGCAGAGGTTGAAACTCTAGGAAAAATCAGACACAAGAACATTGTCAAGCTATGGTGTTGCTGTACCACTAGAGACTCCCAGCTTTTGGTGTATGAGTATATGCAAAATGGTAGTCTTGGTGATTTGCTTCATAGCAGTAAAGGAGGGTTGTTGGATTGGCCAACTAGATATAAGATAGCTGTGGATGCTGCAGATGGACTCTCTTATCTGCATCATGACTGTGTTCCCCCAATTGTTCATAGAGATGTTAAATCTAACAATATCTTATTGGATGGGGACTTTGGTGCAAGGGTGGCAGATTTTGGATTAGCTAAGGTTGTCGAAACCACGGGAAAAGGGATTAAATCTATGTCAATCATAGCTGGTTCTTGTGGCTATATTGCACCAGAATATGCATACACACTCAGAGTGAATGAGAAGAGCGACATTTATAGTTTTGGCGTTGTTTTACTTGAGTTGGTTACCGGAAGACGCCCTGTGGATCCTGAATTTGGAGAGAAAGATTTAGTCAAGTGGGTTTGCACTACATTGGATCAAAAAGGTGTGGATCATGTACTTGACTCGAGGCTTGATTCATGTTTCAAAGAAGAAATTTGCAAGGTCTTCAACATTGGCCTCATGTGTACTAGTCCTCTTCCAATCAACAGGCCTTCAATGAGAAGAGTAGTGAAGATGTTGCAAGAGGTAGGAATAGAAAACCAAATGAAACCAACCAAGAAAGATGGAAAATTAACACCTTATTACTATGATGATGCCTCAGATCATGGTAGTGTTGTTTGA 3015 0.4192 MEEQKQIPFIYIYIVLSTILSLSTTVTSLNQEGLYLYQFKLTLDDPDSFLSSWNPRDTTPCNWYGIRCDTTNTTVTELNLSNTNIQGPFTASILCRLPNLSSINLFNNSINQTFPLQISLCNNLIHLDLSQNLLTGSLPQTLSLLPNLRYLDLTGNNFSGSIPISFGTFQKLEVLSLVSNLLEGTIPPSLGNITTLKMLNLSYNPFFPGRIPLELGNLTNLEVLWLTQCNLVGVIPETLGKLKKLKDLDLALNDLYGSIPSSLTELTSLRQIELYNNSLSGELPRGMGNLTSLRLLDASMNHLTGKIPEELCSLPLESLNLYENRFEGELPASIANSPNLYELRLFGNRLTGKLPENLGKRSPLKWLDVSSNQFWGSIPASLCDLGELEELLVIYNLFTGEIPASLGTCQSLTRVRLGYNRFSGEVPAGIWGLPHVYLLELAHNSFSGSISKTIAGAGNLSLLILSKNNFSGTVPDEVGWLENLVEFSAGDNMFSGSLPDSLVNLGQLGILDFHNNRLSGELPKGIHSWKKLNDLNLANNEIGGMIPDEIGSLSVLNFLDLSRNQFSGKIPHGLQNLKLNQLNLSYNRLSGELPPQLAKEMYKSSFLGNPGLCGDLKGLCDGRNEVKNLGYIWLLRVIFLVAILVLLVGVVLFYFRYKNFKDAKRAIDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLNSGEAVAVKKIWGGVRKEVESGDAEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDSQLLVYEYMQNGSLGDLLHSSKGGLLDWPTRYKIAVDAADGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGLAKVVETTGKGIKSMSIIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVLLELVTGRRPVDPEFGEKDLVKWVCTTLDQKGVDHVLDSRLDSCFKEEICKVFNIGLMCTSPLPINRPSMRRVVKMLQEVGIENQMKPTKKDGKLTPYYYDDASDHGSVV 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03474 1004 FunFam Leucine-rich receptor-like protein kinase family protein 211 309 - -
Trre8g03474 1004 Gene3D Transferase(Phosphotransferase) domain 1 779 996 - -
Trre8g03474 1004 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 29 193 - -
Trre8g03474 1004 FunFam Receptor-like protein kinase HSL1 315 622 - -
Trre8g03474 1004 SUPERFAMILY RNI-like 77 443 - -
Trre8g03474 1004 SUPERFAMILY L domain-like 372 597 - -
Trre8g03474 1004 SUPERFAMILY Protein kinase-like (PK-like) 687 972 IPR011009 -
Trre8g03474 1004 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Trre8g03474 1004 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 395 975 - -
Trre8g03474 1004 Gene3D Ribonuclease Inhibitor 195 266 IPR032675 -
Trre8g03474 1004 Gene3D Ribonuclease Inhibitor 267 336 IPR032675 -
Trre8g03474 1004 Gene3D Phosphorylase Kinase; domain 1 675 778 - -
Trre8g03474 1004 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 779 988 - -
Trre8g03474 1004 SMART LRR_typ_2 97 121 IPR003591 -
Trre8g03474 1004 SMART LRR_typ_2 266 289 IPR003591 -
Trre8g03474 1004 SMART LRR_typ_2 385 409 IPR003591 -
Trre8g03474 1004 SMART LRR_typ_2 145 171 IPR003591 -
Trre8g03474 1004 SMART LRR_typ_2 218 241 IPR003591 -
Trre8g03474 1004 SMART LRR_typ_2 553 576 IPR003591 -
Trre8g03474 1004 SMART LRR_typ_2 505 528 IPR003591 -
Trre8g03474 1004 SMART LRR_typ_2 290 314 IPR003591 -
Trre8g03474 1004 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Trre8g03474 1004 ProSiteProfiles Protein kinase domain profile. 691 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03474 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Trre8g03474 1004 Gene3D Ribonuclease Inhibitor 29 189 IPR032675 -
Trre8g03474 1004 FunFam Receptor-like protein kinase HSL1 675 778 - -
Trre8g03474 1004 Gene3D Ribonuclease Inhibitor 337 623 IPR032675 -
Trre8g03474 1004 Pfam Protein kinase domain 693 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03474 1004 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Trre8g03474 1004 SMART serkin_6 691 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03474 Trre-Chr8 38594126 38597496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03474 25 1004 Receptor kinase-like Gene Family AT1G28440 71.327 0.0 1430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre8g03474 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03474 - - gmx:100819887 1677.92